Sequence
atgc intronic sequence ATGC exonic sequencegcatgacctcccctctagccacattctccatttctctttatttgtaggttatctagactgaaaaactgaacatatttgtatctgccaatgctgatggaactgtgggatgtccagGGTGAGCCCTTCCAAGACTCCGGTGAAGCCCCGTGTAAATCGAGTGGGATCTAACTGACTCTGCGCAAGCTGAACTGGATTGTTCACGGGAAGGCGTCGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G051043_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g11120.1 (Oryza sativa), 3'ss of exon 9
gcatgacctcccctctagccacattctccatttctctttatttgtaggttatctagactgaaaaactgaacatatt-tgtatctgccaatgctgatggaactgtgggatgtccagGGTGAGCCCTTCCAAGACTCCGGTGAAGCCCCGTGTAAATCGAGTGGGATCTAACTGACTCTGCGCAAGCTGAACTGGATTGTTCACGGGAAGGCGTCGC--
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------------------gcatgatccccaatcctgttcatttat---ttatc------ggaagttctaaaatattgtagatttgctgatcttggc--acttgt---atgttcagGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACC--GCTTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32933652|gb|CF038464.1|CF038464EST: GCAGCGGGATGATTTTGGGAACCACTGCCTGTCAG GGTGAGCCCTTCCAAGACTCCGGTGAAGCCCCGCGTAAATCGAGTGGGATC
genomic: GCAGCGGGATGATTTTGGGAA-CACTGCCTGTCAGgcatgacctc ... ggatgtccagGGTGAGCCCTTCCAAGACTCCGGTGAAGCCCCGTGTAAATCGAGTGGGATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaaaactgaacatatttgtatctgccaatgctgatggaactgtgggatgtccagGGTGAGCCCTTCCAAGACTCCGGTGAAGCCCCGTGTAAATCGAGTGGGATCTAACTGACTCTGCGCAAGCTGAACTGGATTGTTCACGGGAAGGCGTCGC
tgctgat putative branch site (score: 3)
atatttgtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcatgacctcccctctagccacattctccatttctctttatttgtaggttatctagactgaaaaactgaacatatttgtatctgccaatgctgatggaactgtgggatgtccagGGTGAGCCCTTCCAAGACTCCGGTGAAGCCCCGTGTAAATCGAGTGGGATCTAACTGACTCTGCGCAAGCTGAACTGGATTGTTCACGGGAAGGCGTCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA