1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttccattgattgcggtgtcctcacccctgatgcggtgacgtgtgattcctagcacattgcaggcgccccccactgatgcgacttggctgatttgttgtagGTTCCGTGCGTGAGGAGCACTGGTTCAGCCCATTTCGGCCGCGCCTTCCCCTCCGTCGCGGTCTCCTCTTTGGC
species | Zea mays |
transcript | GRMZM2G051004_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCCACGCCCGCCGCCGGATCCCGCGCCGCCGCGGCCGACCCCGTCAAG GTTCCGTGCGTGAGGAGCACTGGTTCAGCCCATTTCGGCCGCGCCTTCCCCEST: gi|31612121|gb|CD568743.1|CD568743
genomic: CCTCCACGCC-GCCGCCGGATCCCGCGCCGCCGCGGCCGACCCCGTCAAGgtatacctgc ... tttgttgtagGTTCCGTGCGTGAGGAGCACTGGTTCAGCCCATTTCGGCCGCGCCTTCCCC
EST: CGCCGCCGCGGCCGACCCCGTCAAG GTTCCGTGCGTGAGGAGCACTGGTTCAGCCCATTTCGGCCGCGCCTTCCCCEST: gi|31664252|gb|CD572977.1|CD572977
genomic: CGCCGCCGCGGCCGACCCCGTCAAGgtatacctgc ... tttgttgtagGTTCCGTGCGTGAGGAGCACTGGTTCAGCCCATTTCGGCCGCGCCTTCCCC
EST: GCGCCGCCGCGGCCGACCCCGTCAAG GTTCCG-GCGTGAGGAGCACTGGTTCAGCCCATTTCGGCCGCGCCTTCCCC
genomic: GCGCCGCCGCGGCCGACCCCGTCAAGgtatacctgc ... tttgttgtagGTTCCGTGCGTGAGGAGCACTGGTTCAGCCCATTTCGGCCGCGCCTTCCCC
ttcctagcacattgcaggcgccccccactgatgcgacttggctgatttgttgtagGTTCCGTGCGTGAGGAGCACTGGTTCAGCCCATTTCGGCCGCGCCTTCCCCTCCGTCGCGGTCTCCTCTTTGGC
atttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccattgattgcggtgtcctcacccctgatgcggtgacgtgtgattcctagcacattgcaggcgccccccactgatgcgacttggctgatttgttgtagGTTCCGTGCGTGAGGAGCACTGGTTCAGCCCATTTCGGCCGCGCCTTCCCCTCCGTCGCGGTCTCCTCTTTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - tgattgc
- - - - - - - - - - - - - ctgatgc
- - - - - - - - - - - - - - - - - - - - tgtgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaggc