1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaatgcacatgtgtctgctgaagtttttagaagttgatagtttgatataattgattgttctgagttctgagtttctgacaaaactgttttattcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG
species | Zea mays |
transcript | GRMZM2G050961_T06 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCGACGGGCTGGACTGCGCGTGGCCGCGCTTAAGTACGACCCTGCCAAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|13198326|gb|BG354265.1|BG354265
genomic: CCCGACGGGCTGGACTGCGCGTGGCCGCGCTTAAGTACGACCCTGCCAAGgtgggtgggt ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: GACGGGGCTGGACCTGCGCGTGGCCGCGCCTTAAGTACGACCCTGCCAAG AAATCTGCTGGCGG-GTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGAEST: gi|211485848|gb|FK973440.1|FK973440
genomic: GAC-GGGCTGGA-CTGCGCGTGGCCGCG-CTTAAGTACGACCCTGCCAAGgtgggtgggt ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
EST: CCCGACGGGCTGGACTGCGCGTGGCCGCGCTTAAGTACGACCCTGCCAAG AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
genomic: CCCGACGGGCTGGACTGCGCGTGGCCGCGCTTAAGTACGACCCTGCCAAGgtgggtgggt ... attcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGA
tataattgattgttctgagttctgagtttctgacaaaactgttttattcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG
ttctgac putative branch site (score: 145)
ttttattc putative PPT
aaaactgttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatgcacatgtgtctgctgaagtttttagaagttgatagtttgatataattgattgttctgagttctgagtttctgacaaaactgttttattcatgcagAAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
gaatgca
- - - - - - -tctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgttt