1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgggtgggttcgctgctgtgtgaatccatgcgctctggtttcgagtcttcaaggtttgctgggtggaatttatgatctaagtctaacggtgtggttcttggtttttttttggggggggcagGTGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG
species | Zea mays |
transcript | GRMZM2G050961_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACGGGCTGGACTGCGCGTGGCCGCGCTTAAGTACGACCCTGCCAAG GTGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGEST: gi|74233447|gb|DT641361.1|DT641361
genomic: GACGGGCTGGACTGCGCGTGGCCGCGCTTAAGTACGACCCTGCCAAGgtgggtgggt ... gggggggcagGTGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG
EST: CCCGACGGGCTGGACTGCGCGTGGCCGCGCTTAAGTACGACCCTGCCAAG GTGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGEST: gi|211485846|gb|FK973438.1|FK973438
genomic: CCCGACGGGCTGGACTGCGCGTGGCCGCGCTTAAGTACGACCCTGCCAAGgtgggtgggt ... gggggggcagGTGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG
EST: CCCGACGGGCTGGACTGCGCGTGGCCGCGCTTAAGTACGACCCTGCCAAG GTGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGEST: gi|74237817|gb|DT645731.1|DT645731
genomic: CCCGACGGGCTGGACTGCGCGTGGCCGCGCTTAAGTACGACCCTGCCAAGgtgggtgggt ... gggggggcagGTGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG
EST: CCCGACGGGCTGGACTGCGCGTGGCCGCGCTTAAGTACGACCCTGCCAAG GTGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAGEST: gi|13382242|gb|BG458917.1|BG458917
genomic: CCCGACGGGCTGGACTGCGCGTGGCCGCGCTTAAGTACGACCCTGCCAAGgtgggtgggt ... gggggggcagGTGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG
EST: CCCGACGGGCTGGACTGCGCGTGGCCGCGCTTAAGTACGACCCTGCCAAG GTGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG
genomic: CCCGACGGGCTGGACTGCGCGTGGCCGCGCTTAAGTACGACCCTGCCAAGgtgggtgggt ... gggggggcagGTGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG
aatttatgatctaagtctaacggtgtggttcttggtttttttttggggggggcagGTGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG
gtctaac putative branch site (score: 2)
ttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtgggttcgctgctgtgtgaatccatgcgctctggtttcgagtcttcaaggtttgctgggtggaatttatgatctaagtctaacggtgtggttcttggtttttttttggggggggcagGTGGCGCCGCAGAACGACCGGGTTCTCGTCCGTCTTGAGCAGATCCCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT