1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagcgagtacgcgcgaggctcaatacgctgctgctcctcggctttcgcctgttctgctgccggtgttaatatcgcacctgtttttcttcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
species | Zea mays |
transcript | GRMZM2G050925_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATG ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGEST: gi|76020050|gb|DT947220.1|DT947220
genomic: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
EST: TCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATG ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGEST: gi|211448197|gb|FL410300.1|FL410300
genomic: TCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
EST: ACTCGGAGCTCGCGCGCCCGACGGCCCACCATG ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGEST: gi|78074399|gb|DV502833.1|DV502833
genomic: ACTCGGAGCTCGCGCGCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
EST: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATG ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGEST: gi|78082396|gb|DV510808.1|DV510808
genomic: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
EST: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATG ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGEST: gi|94475894|gb|EB704852.1|EB704852
genomic: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
EST: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATG ATCATCCCCAAGAAGAACCGCAATGAGATCTGC---TACCTCTTCAAGGEST: gi|22935805|gb|BU572080.1|BU572080
genomic: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
EST: CCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATG ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGEST: gi|50328582|gb|CO523708.1|CO523708
genomic: CCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
EST: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATG ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGEST: gi|31358616|gb|CD442973.1|CD442973
genomic: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
EST: GCTCCAGCAGAACAGCACTCGGAGCTCGC-CTGCCCGACGGCCCACCATG ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGEST: gi|148995686|gb|EE034906.2|EE034906
genomic: GCTCCAGCAGTCCAGCACTCGGAGCTCGCGC-GCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
EST: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATG ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGEST: gi|120480896|gb|EH211080.1|EH211080
genomic: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
EST: CGCTCCAGCAGTCCGGCACTCGGAGCTCGCGCG-CCGACGGCCCACCATG AEST: gi|120480896|gb|EH211080.1|EH211080
genomic: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcag-
EST: CGCTCCAGCAGTCCGGCACTCGGAGCTCGCGCG-CCGACGGCCCACCATG AEST: gi|211321903|gb|FL420982.1|FL420982
genomic: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcag-
EST: GCTCCAGCAGAACAGCACTCGGAGCTCGC-CTGCCCGACGGCCCACCATG ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGEST: gi|32917369|gb|CF022181.1|CF022181
genomic: GCTCCAGCAGTCCAGCACTCGGAGCTCGCGC-GCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
EST: GCTCCAGCAGAACAGCACTCGGAGCTCGC-CTGCCCGACGGCCCACCATG ATCATCCCCAAGAAAAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGEST: gi|22935565|gb|BU571840.1|BU571840
genomic: GCTCCAGCAGTCCAGCACTCGGAGCTCGCGC-GCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
EST: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATG ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGEST: gi|67017839|gb|CO446588.1|CO446588
genomic: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
EST: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATG ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGEST: gi|60345271|gb|DN212244.1|DN212244
genomic: CGCTCCAGCAGTCCAGCACTCGGAGCTCGCGCGCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
EST: CGGCCCACCATG ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGEST: gi|211366018|gb|FL393816.1|FL393816
genomic: CGGCCCACCATGgtaagcgagt ... tcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
EST: GCTCCAGCAGAACAGCACTCGGAGCTCGC-CTGCCCGACGGCCCACCATG ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
genomic: GCTCCAGCAGTCCAGCACTCGGAGCTCGCGC-GCCCGACGGCCCACCATGgtaagcgagt ... tcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
tttcgcctgttctgctgccggtgttaatatcgcacctgtttttcttcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
tgttaat putative branch site (score: 95)
cacctgtttttcttc putative PPT
tgttaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgagtacgcgcgaggctcaatacgctgctgctcctcggctttcgcctgttctgctgccggtgttaatatcgcacctgtttttcttcaaccgcagATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC