1 5' 3' |
...gggaaatgtttgctgcgaattggttgctgattttatcaattcttagctccaatattgtaacagtgattgtgtaacttagtaatgaattttctcccctcagGTTGCCATCCCAGTCGTGCCTACGATCAGAGTGCTTGTGACATTCACGAAATTCGAGGAGCTACAGCCGCTAGAGGAGTTCGGCACACCACCTTCAAGCC
species | Zea mays |
transcript | GRMZM2G050885_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGAGGGATCTACTTACAACAAAACTCCCTCCAGATACATTTCCTGTCAAG GTTGCCATCCCAGTCGTGCCTACGATCAGAGTGCTTGTGACATTCACGAAAEST: gi|211464886|gb|FK984358.1|FK984358
genomic: TGAGGGATCTACTTACAACAAAACTCCCTCCAGATACATTTCCTGTCAAGgtatgatctg ... ctcccctcagGTTGCCATCCCAGTCGTGCCTACGATCAGAGTGCTTGTGACATTCACGAAA
EST: TGAGGGATCTACTTACAACAAAACTCCCTCCAGATACATTTCCTGTCAAG GTTGCCATCCCAGTCGTGCCTACGATCAGAGTGCTTGTGACATTCACGAAAEST: gi|211464887|gb|FK984359.1|FK984359
genomic: TGAGGGATCTACTTACAACAAAACTCCCTCCAGATACATTTCCTGTCAAGgtatgatctg ... ctcccctcagGTTGCCATCCCAGTCGTGCCTACGATCAGAGTGCTTGTGACATTCACGAAA
EST: TGAGGGATCTACTTACAACAAAACTCCCTCCAGATACATTTCCTGTCAAG GTTGCCATCCCAGTCGTGCCTACGATCAGAGTGCTTGTGACATTCACGAAA
genomic: TGAGGGATCTACTTACAACAAAACTCCCTCCAGATACATTTCCTGTCAAGgtatgatctg ... ctcccctcagGTTGCCATCCCAGTCGTGCCTACGATCAGAGTGCTTGTGACATTCACGAAA
gctccaatattgtaacagtgattgtgtaacttagtaatgaattttctcccctcagGTTGCCATCCCAGTCGTGCCTACGATCAGAGTGCTTGTGACATTCACGAAATTCGAGGAGCTACAGCCGCTAGAGGAGTTCGGCACACCACCTTCAAGCC
ttttctcccctc CT-rich tract
ttagtaatgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggaaatgtttgctgcgaattggttgctgattttatcaattcttagctccaatattgtaacagtgattgtgtaacttagtaatgaattttctcccctcagGTTGCCATCCCAGTCGTGCCTACGATCAGAGTGCTTGTGACATTCACGAAATTCGAGGAGCTACAGCCGCTAGAGGAGTTCGGCACACCACCTTCAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - -ttgctgc
- - - - - - - - - - - gttgctg
- - - - - - - - - - - - - - - - - - - - - - agctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgattg