1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caagactgaaggatggatgatcacatcttaaataaatgcattgactatatgacaagctttgttcctctcatgatgaaattacttctaaaatttctatcagCTGAAGCTGCTGGACCAGACGGACTGCAGAAGTCAAAATCTGATTCTAAAGCTACAGCAAGTGTTCTTGCTCCACCAAAAGCTGTGGTGGATCTGCAAGT
species | Zea mays |
transcript | GRMZM2G050701_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATGGGCGGATGCTTCTCGCAGGAGGAGCACCGGCTCCAGAGCAGGCCAG CTGAAGCTGCTGGACCAGACGGACTGCAGAAGTCAAAATCTGATTCTAAAGEST: gi|211452430|gb|FK953965.1|FK953965
genomic: CATGGGCGGATGCTTCTCGCAGGAGGAGCACCGGCTCCAGAGCAGGCCAGgttcgtgctc ... tttctatcagCTGAAGCTGCTGGACCAGACGGACTGCAGAAGTCAAAATCTGATTCTAAAG
EST: CATGGGCGGATGCTTCTCGCAGGAGGAGCACCGGCTCCAGAGCAGGCCAG CTGAAGCTGCTGGACCAGACGGACTGCAGAAGTCAAAATCTGATTCTAAAGEST: gi|211452431|gb|FK953966.1|FK953966
genomic: CATGGGCGGATGCTTCTCGCAGGAGGAGCACCGGCTCCAGAGCAGGCCAGgttcgtgctc ... tttctatcagCTGAAGCTGCTGGACCAGACGGACTGCAGAAGTCAAAATCTGATTCTAAAG
EST: CATGGGCGGATGCTTCTCGCAGGAGGAGCACCGGCTCCAGAGCAGGCCAG CTGAAGCTGCTGGACCAGACGGACTGCAGAAGTCAAAATCTGATTCTAAAGEST: gi|211452429|gb|FK953964.1|FK953964
genomic: CATGGGCGGATGCTTCTCGCAGGAGGAGCACCGGCTCCAGAGCAGGCCAGgttcgtgctc ... tttctatcagCTGAAGCTGCTGGACCAGACGGACTGCAGAAGTCAAAATCTGATTCTAAAG
EST: CATGGGCGGATGCTTCTCGCAGGAGGAGCACCGGCTCCAGAGCAGGCCAG CTGAAGCTGCTGGACCAGACGGACTGCAGAAGTCAAAATCTGATTCTAAAG
genomic: CATGGGCGGATGCTTCTCGCAGGAGGAGCACCGGCTCCAGAGCAGGCCAGgttcgtgctc ... tttctatcagCTGAAGCTGCTGGACCAGACGGACTGCAGAAGTCAAAATCTGATTCTAAAG
tatatgacaagctttgttcctctcatgatgaaattacttctaaaatttctatcagCTGAAGCTGCTGGACCAGACGGACTGCAGAAGTCAAAATCTGATTCTAAAGCTACAGCAAGTGTTCTTGCTCCACCAAAAGCTGTGGTGGATCTGCAAGT
ttctaaa putative branch site (score: 2)
tttctatc CT-rich tract
aaattacttctaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagactgaaggatggatgatcacatcttaaataaatgcattgactatatgacaagctttgttcctctcatgatgaaattacttctaaaatttctatcagCTGAAGCTGCTGGACCAGACGGACTGCAGAAGTCAAAATCTGATTCTAAAGCTACAGCAAGTGTTCTTGCTCCACCAAAAGCTGTGGTGGATCTGCAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - atggatg
- - - - - - - - - - - - - - - - - -atgcatt