1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatctctccctcttcccccctcctgttcaggcggcggttcgttgtttcgctctggatttcgctgtgggattcgtagcttacggtttcgtttgcctggatgtttccgcgtggtgcggcagATGTGGAGGAGTTCTACAAGTTGTGCGACCCAG
species | Zea mays |
transcript | GRMZM2G050495_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACGGATTTCCGCGCCCGCCGTGACGGCATTCTCAAGGCACTCACCACCG ATGTGGAGGAGTTCTACAAGTTGTGCGACCCAGEST: gi|211414948|gb|FL347431.1|FL347431
genomic: CACGGATTTCCGCGCCCGCCGTGACGGCATTCTCAAGGCACTCACCACCGgtatctctcc ... ggtgcggcagATGTGGAGGAGTTCTACAAGTTGTGCGACCCAG
EST: CACGGATTTCCGCGCCCGCCGTGACGGCATTCTCAAGGCACTCACCACCG ATGTGGAGGAGTTCTACAAGTTGTGCGACCCAG
genomic: CACGGATTTCCGCGCCCGCCGTGACGGCATTCTCAAGGCACTCACCACCGgtatctctcc ... ggtgcggcagATGTGGAGGAGTTCTACAAGTTGTGCGACCCAG
tgggattcgtagcttacggtttcgtttgcctggatgtttccgcgtggtgcggcagATGTGGAGGAGTTCTACAAGTTGTGCGACCCAG
agcttac putative branch site (score: 10)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctctccctcttcccccctcctgttcaggcggcggttcgttgtttcgctctggatttcgctgtgggattcgtagcttacggtttcgtttgcctggatgtttccgcgtggtgcggcagATGTGGAGGAGTTCTACAAGTTGTGCGACCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG