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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggtccgtcggtacctccccctccctcccatccaccagatctcttgaccccgggcgccgcctcacccaaatcctcccccaaaaaatctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGCGGGGCTCAAGGCCGACGCGCGCGTGCTCATCAACCGCGCTCGCGTGGAG

Basic information

species Zea mays
transcript GRMZM2G050467_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G050467_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g43540.1 (Oryza sativa), 3'ss of exon 1
gtcggtccgtcggtacctccccctccctcccatccaccagatctcttgaccccgggcgccgcctcacccaaatcctcccccaaaaaatctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGCGGGGCTCAAGGCCGACGCGCGCGTGCTCATCAACCGCGCTCGCGTGGAG
||   ||| ||       ||| | ||||||| | | || ||||||     |||| |   ||          |||  ||||| |||        ||||||| ||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| || ||||| |||
gtaaatccttcaa-----cccgccccctccccttcgccggatctca----cccgcggatcg----------atctcccccccaaa------tccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCGGGGCTCAAGGCGGACGCCCGCGTGCTCATCAACCGGGCGCGCGTCGAG

upper sequence: GRMZM2G050467_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G23580.1 (Glycine max), 3'ss of exon 1
gtcggtccgt--cggtacctccccctccctcccatccaccagatctcttgaccccgggcgccgcctcac-ccaaatcctc-ccccaaaaaatctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGCGGGGCTCAAGGCCGACGCGCGCGTGCTCATCAACCGCGCTCGCGTGGAG
|        |      | ||  |  |  |   ||   |  | |  |    |     | || ||  |||   | || |||            | | |||||||| ||| | ||||| | ||  ||||||  |||||| |||||||| ||||||||||| ||||||||||| ||||||||||| ||| | || || ||||||
gctaacgaatactaacaactaacatttgcaatcaaagaagaaaaataacaaaaaacgacgtcgtttcaaatcgaaccctgattttgtgtcgttttcgcagGTCGGTGAGGAAGATAGTGAATCTGGACGACCACATTGCGCTGGCCTGCGCGGGGCTGAAGGCCGACGCACGCGTGCTCATAAACAGGGCACGTGTGGAG

upper sequence: GRMZM2G050467_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G05190.1 (Glycine max), 3'ss of exon 1
gtcggtccgtcg-gtacctccccc-tccctcccatccaccagatctcttgaccccgggcgccgcctcac-ccaaatcctcccccaaaaaatc---tccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGCGGGGCTCAAGGCCGACGCGCGCGTGCTCATCAACCGCGCTCGCGTGGAG
  |    |  |   || |||  || | ||    ||       | |     |     | || ||  |||    |||  ||           ||   | |||||||| ||| | ||||| | ||  ||||||| |||||| |||||||| ||||||||||| ||||||||||| || |||||||| ||| | || || ||||||
--caactcaccttatatctctgccgttcccttaataggtgtaaaccaaaaaaaaacgacgtcgtttcaaattaaacactgatttggtgtgtcgttttcgcagGTCGGTGAGGAAGATTGTGAATCTGGACAACCACATTGCGCTGGCATGCGCGGGGCTGAAGGCCGACGCACGTGTGCTCATAAACAGGGCACGTGTGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20301461|gb|BQ164404.1|BQ164404
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|71768708|gb|DR966645.1|DR966645
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|211401137|gb|FL424147.1|FL424147
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGTGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|211082583|gb|FL409641.1|FL409641
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|148934351|gb|EC878380.2|EC878380
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|211496366|gb|FL389439.1|FL389439
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGTGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|148963717|gb|EE014787.2|EE014787
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|29947049|gb|CB816457.1|CB816457
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|22472569|gb|BU037049.1|BU037049
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|31360022|gb|CD444379.1|CD444379
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|15215138|gb|BI431176.1|BI431176
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGTGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|211493216|gb|FL379778.1|FL379778
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGTGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|31355408|gb|CD439765.1|CD439765
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|78075768|gb|DV504202.1|DV504202
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|78090575|gb|DV518949.1|DV518949
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|29947258|gb|CB816562.1|CB816562
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|211434343|gb|FL408458.1|FL408458
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGTGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|211353456|gb|FL060080.1|FL060080
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|211484647|gb|FL381876.1|FL381876
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGTGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|211353455|gb|FL060079.1|FL060079
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|211315243|gb|FL162185.1|FL162185
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGTGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|22546067|gb|BU098388.1|BU098388
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|28873737|gb|CB329684.1|CB329684
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|211111201|gb|FL406926.1|FL406926
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGTGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|148949059|gb|EC894482.2|EC894482
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|213191090|gb|FM185030.1|FM185030
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|211045303|gb|FL393092.1|FL393092
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGTGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|28576018|gb|CB281910.1|CB281910
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|211431909|gb|FL416862.1|FL416862
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGTGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|148963265|gb|EE014254.2|EE014254
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|211142873|gb|FL377133.1|FL377133
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGC
EST: gi|76020389|gb|DT947559.1|DT947559
EST:     GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAG                         GTCCGTGCGCAAGATCGCGAGTCTGGACACCCACATCGCGGCTGGCGTGCG
genomic: GTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCG-CTGGCGTGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 228

AGGCCGTCCGCAAGGGCAACGCCGCTGTCGGCGTCCGCGGTGTCGACACCGTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGCGGGGCTCAAGGCCGACGCGCGCGTGCTCATCAACCGCGCTCGCGTGGAG


Block sizes: 45 (upstream exon), 47 (downstream exon)
Score: 319

AGGCCGTCCGCAAGGGCAACGCCGCTGTCGGCGTCCGCGGTGTCGACACCGTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGCGGGGCTCAAGGCCGACGCGCGCGTGCTCATCAACCGCGCTCGCGTGGAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 304

AGGCCGTCCGCAAGGGCAACGCCGCTGTCGGCGTCCGCGGTGTCGACACCGTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGCGGGGCTCAAGGCCGACGCGCGCGTGCTCATCAACCGCGCTCGCGTGGAG


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 365

AGGCCGTCCGCAAGGGCAACGCCGCTGTCGGCGTCCGCGGTGTCGACACCGTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgt ... atctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGCGGGGCTCAAGGCCGACGCGCGCGTGCTCATCAACCGCGCTCGCGTGGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcttgaccccgggcgccgcctcacccaaatcctcccccaaaaaatctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGCGGGGCTCAAGGCCGACGCGCGCGTGCTCATCAACCGCGCTCGCGTGGAG
                   gcctcac  putative branch site (score: 365)
                                              tctccgc  putative PPT
                                        aaaaaatct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcggtccgtcggtacctccccctccctcccatccaccagatctcttgaccccgggcgccgcctcacccaaatcctcccccaaaaaatctccgcagGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACATCGCGCTGGCGTGCGCGGGGCTCAAGGCCGACGCGCGCGTGCTCATCAACCGCGCTCGCGTGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG