1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgttttaggtatcgaattatcgatgtgagctttcattatacaggaagtattgtatcatgcacaacacactttctttctaactctagcaatttcttgcagCCAAACAGGCTCCTAAGGATTTCCTTCAAATCATTGATTTTGACAAGGATACAATAATGAAGATTCTTAATCGAGCCATCGAGGTTAAGGCATTGATAAA
species | Zea mays |
transcript | GRMZM2G050371_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTCGCCGCCGTGTCGAGCCCCGTTGTGTCCGCCGCCGCGGGGAAGGATG CCAAACAGGCTCCTAAGGATTTCCTTCAAATCATTGATTTTGACAAGGATAEST: gi|9255284|gb|BE345752.1|BE345752
genomic: GGTCGCCGCCGTGTCGAGCCCCGTTGTGTCCGCCGCCGCGGGGAAGGATGgttagttatt ... tttcttgcagCCAAACAGGCTCCTAAGGATTTCCTTCAAATCATTGATTTTGACAAGGATA
EST: GGTCGCCGCCGTGTCGAGCCCCGTTGTGTCCGCCGCCGCGGGGAAGGATG CCAAACAGGCTCCTAAGGATTTCCTTCAAATCATTGATTTTGACAAGGATA
genomic: GGTCGCCGCCGTGTCGAGCCCCGTTGTGTCCGCCGCCGCGGGGAAGGATGgttagttatt ... tttcttgcagCCAAACAGGCTCCTAAGGATTTCCTTCAAATCATTGATTTTGACAAGGATA
aagtattgtatcatgcacaacacactttctttctaactctagcaatttcttgcagCCAAACAGGCTCCTAAGGATTTCCTTCAAATCATTGATTTTGACAAGGATACAATAATGAAGATTCTTAATCGAGCCATCGAGGTTAAGGCATTGATAAA
ttctaac putative branch site (score: 71)
tttcttgc putative PPT
aatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttttaggtatcgaattatcgatgtgagctttcattatacaggaagtattgtatcatgcacaacacactttctttctaactctagcaatttcttgcagCCAAACAGGCTCCTAAGGATTTCCTTCAAATCATTGATTTTGACAAGGATACAATAATGAAGATTCTTAATCGAGCCATCGAGGTTAAGGCATTGATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - -cgatgtg
- - - - - - - - - - - - - - - -tttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaca