Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagactccaccacagctagatctgtcacacgcctcaactagctggtgactatgcaccttcatctgcgttgtgcgtggtagattgattggtgggattgtataagtcgatttgactcgtgaattttggctgcctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA

Basic information

species Zea mays
transcript GRMZM2G048703_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048703_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g15590.1 (Oryza sativa), 3'ss of exon 1
----gtaagactccaccacagctagatctg--tcacacgcctcaactagctggtgactatgcaccttcatctgcgttgtgcgtggt--agattgattggtgggat-tgtataagt----cgatttgactcgtgaattt--tggctgcctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA
    |||   |||| || | ||||||||    |   |   | |  |  |   | |   | |    |||  | |||      | |||  |||| || | |   ||| | | |||||    ||  ||   | ||   |||  |  |||     | |||||  | | ||||||| |||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||| |||| |||||||| 
gtaagtactcctccgccgccgctagatccagcttctatttccctcccggaaagaggaaaagttgtttctccagcgcgcctggaggttgagatcgagtagatagatgtatgtaagtaacccgtgttcctttgttttttttttacctgtgcacccgcagCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAGTCCTACGAGGACAACATCAAGAAGATCGTCGACTTCAGCACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211257254|gb|FK964960.1|FK964960
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211118686|gb|FK964926.1|FK964926
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211119484|gb|FK964938.1|FK964938
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|148936054|gb|EC880114.2|EC880114
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|87153049|gb|DY397838.1|DY397838
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|6445424|gb|AW179492.1|AW179492
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211119483|gb|FK964937.1|FK964937
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211254819|gb|FK964954.1|FK964954
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211257255|gb|FK964961.1|FK964961
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211119475|gb|FK964929.1|FK964929
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|74232667|gb|DT640581.1|DT640581
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211119482|gb|FK964936.1|FK964936
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211254812|gb|FK964947.1|FK964947
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|28361610|gb|CB239966.1|CB239966
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|93012199|gb|EB637719.1|EB637719
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211254818|gb|FK964953.1|FK964953
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|31612425|gb|CD569047.1|CD569047
EST:     TTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: TTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|71327672|gb|DR800450.1|DR800450
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211257256|gb|FK964962.1|FK964962
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|91053786|gb|EB164204.1|EB164204
EST:     CAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: CAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211118687|gb|FK964927.1|FK964927
EST:     AGACCGAGCGCCGCAACCTCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211254816|gb|FK964951.1|FK964951
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211254820|gb|FK964955.1|FK964955
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|14245305|gb|BG873887.1|BG873887
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211118679|gb|FK964919.1|FK964919
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211254811|gb|FK964946.1|FK964946
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|74232666|gb|DT640580.1|DT640580
EST:     ACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: ACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|19058335|gb|BM737002.1|BM737002
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211119478|gb|FK964932.1|FK964932
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|60351308|gb|DN218281.1|DN218281
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211118683|gb|FK964923.1|FK964923
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211254810|gb|FK964945.1|FK964945
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211118678|gb|FK964918.1|FK964918
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211118684|gb|FK964924.1|FK964924
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211254809|gb|FK964944.1|FK964944
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTARG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211257253|gb|FK964959.1|FK964959
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211119488|gb|FK964942.1|FK964942
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211118674|gb|FK964914.1|FK964914
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|78088649|gb|DV517042.1|DV517042
EST:     TCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: TCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211119485|gb|FK964939.1|FK964939
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211254822|gb|FK964957.1|FK964957
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCAGCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211254814|gb|FK964949.1|FK964949
EST:     AGACCGAGCGCCGCAACCTCGACCTCAAGTCCGGCCTTCACCCCCTTAGGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCA
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTA-GGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCA
EST: gi|211118682|gb|FK964922.1|FK964922
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|78088650|gb|DV517043.1|DV517043
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211119477|gb|FK964931.1|FK964931
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|31349975|gb|CD434332.1|CD434332
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211254821|gb|FK964956.1|FK964956
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211119481|gb|FK964935.1|FK964935
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211119487|gb|FK964941.1|FK964941
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211118677|gb|FK964917.1|FK964917
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|28361792|gb|CB240148.1|CB240148
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|149070116|gb|EE158515.2|EE158515
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211119476|gb|FK964930.1|FK964930
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211254808|gb|FK964943.1|FK964943
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211118676|gb|FK964916.1|FK964916
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|89760553|gb|DY688916.1|DY688916
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211254813|gb|FK964948.1|FK964948
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|149005273|gb|EE039821.2|EE039821
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211119474|gb|FK964928.1|FK964928
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211257252|gb|FK964958.1|FK964958
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211118680|gb|FK964920.1|FK964920
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211118681|gb|FK964921.1|FK964921
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|8368073|gb|BE051018.1|BE051018
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGTAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|31612426|gb|CD569048.1|CD569048
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211118685|gb|FK964925.1|FK964925
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211119479|gb|FK964933.1|FK964933
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211118675|gb|FK964915.1|FK964915
EST:     AGACCGAGCGCCGCAACCTCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
EST: gi|211254817|gb|FK964952.1|FK964952
EST:     AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGG                         CACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG
genomic: AGACCGAGCGCCGCAACCGCGACCTCAAGTCCGGCCTTCACCCCCTTAGGgtaagactcc ... ctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtgggattgtataagtcgatttgactcgtgaattttggctgcctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA
                     atttgac  putative branch site (score: 4)
                                            cctgtct  putative PPT
        attgtataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagactccaccacagctagatctgtcacacgcctcaactagctggtgactatgcaccttcatctgcgttgtgcgtggtagattgattggtgggattgtataagtcgatttgactcgtgaattttggctgcctgtctgcagCACAAACTCGTGCTCTGGTACACTCGCCGGACGCCTGGAGCGAGGTCGCAGTCGTACGAGGACAACATCAAGAAGATCATCGATTTCAGCACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA