Sequence
atgc intronic sequence ATGC exonic sequence...tgacagtgaattcagaggtggtgctgatagaaagggctttgaataatggctgacagaactctgtttttttcttctttttgttttgtttaattcaatgaagGGGCTGAGAGATGCGTGGGAGCAGGTGAAGGAGATGAGAGCCAGGGAGGAGGAGACCAGGCAGAGAGCTGCCTTCCTCCAGCACGGCTTCGCGTCGGCGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G048192_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g02030.1 (Oryza sativa), 3'ss of exon 1
----tgacagtgaattcagaggtggtgctgatagaaagggctttgaataatggctgacagaactctgtttttttcttctttttgttttgtttaattcaatgaagGGGCTGAGAGATGCGTGGGAGCAGGTGAAGGAGATGAGAGCCAGGGAGGAGGAGACCAGGCAGAGAGCTGCCTTCCTCCAGCACGGCTTCGCGTCGGCGT
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cagattaatgctaatt-ggtgggggtgc--atgggacatacatactacacttatcagcatcatagtgctaactgctaacatttgtgc-gtgttactcaatgtagGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGGCATCGTTTCTCCAGCAAGGCTTCGCGGCGGCGT
upper sequence: GRMZM2G048192_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g02070.1 (Oryza sativa), 3'ss of exon 1
tgacagtgaattcagaggtggtgctgatagaaagggc-tttgaataatggctgacagaactctgtttttttcttctttttgttttgtttaattcaatgaagGGGCTGAGAGATGCGTGGGAGCAGGTGAAGGAGATGAGAGCCAGGGAGGAGGAGACCAGGCAGAGAGCTGCCTTCCTCCAGCACGGCTTCGCGTCGGCGT
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caatcacagatt-aatgcttttttttttggtgggggtgcatgggacatactacactaatcagcatcatggtgctaacatttgtgcgtgttacgcaatgtagGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGGCATCGTTTCTCCAGGAAGGCTTCGCGGCGGCGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211300601|gb|FL028384.1|FL028384EST: ACGACGGCGGTGGCCGTTCTGTCCAGCTCCAGCCTCGCG-CTCGGCCAAG GGGCTGAGAGATGCGTGGGAGCAGGTGAAGGAGATGAGAGCCAGGGAGGAG
genomic: ACGACGGCGGTGGCCGTTCTGTCCAGCTCCAGCCTCGCGGCTCGGCCAAGgtaaccgctg ... ttcaatgaagGGGCTGAGAGATGCGTGGGAGCAGGTGAAGGAGATGAGAGCCAGGGAGGAG
EST:
gi|211300600|gb|FL028383.1|FL028383EST: ACGACGGCGGTGGCCGTTCTGTCCAGCTCCAGCCTCGCGGCTCGGCCAAG GGGCTGAGAGATGCGTGGGAGCAGGTGAAGGAGATGAGAGCCAGGGAGGAG
genomic: ACGACGGCGGTGGCCGTTCTGTCCAGCTCCAGCCTCGCGGCTCGGCCAAGgtaaccgctg ... ttcaatgaagGGGCTGAGAGATGCGTGGGAGCAGGTGAAGGAGATGAGAGCCAGGGAGGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atggctgacagaactctgtttttttcttctttttgttttgtttaattcaatgaagGGGCTGAGAGATGCGTGGGAGCAGGTGAAGGAGATGAGAGCCAGGGAGGAGGAGACCAGGCAGAGAGCTGCCTTCCTCCAGCACGGCTTCGCGTCGGCGT
ctctgtttttttcttc CT-rich tract
tttttttcttcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgacagtgaattcagaggtggtgctgatagaaagggctttgaataatggctgacagaactctgtttttttcttctttttgttttgtttaattcaatgaagGGGCTGAGAGATGCGTGGGAGCAGGTGAAGGAGATGAGAGCCAGGGAGGAGGAGACCAGGCAGAGAGCTGCCTTCCTCCAGCACGGCTTCGCGTCGGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC