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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcgctgaaaaaaagtgctgtgcacgggcaatgcatgcagGTGGGCGATCCGTGGAAGGATCACGACTGCTGGGAGAGGCCGGAGGACATGGACACGGACCGCACGGTGTACAACGTCAGCGCGGGGCGCCCGGGCTCGG

Basic information

species Zea mays
transcript GRMZM2G048165_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048165_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os09g36060.1 (Oryza sativa), 3'ss of exon 1
-----------------------------------------------gtcgctgaaaaaaagtgc-tgtgcacggg--caatgc--atgcagGTGGGCGATCCGTGGAAGGATCACGACTGCTGGGAGAGGCCGGAGGACATGGACACGGACCGCACGGTGTACAACGTCAGCGCGGGGCGCCCGGGCTCGG
                                               ||||  |   |  |     || || |||   | |||   |||||||||||||| ||   |||||| ||||  ||||||||| ||||||||||||||||||| |   | |||||||||||| ||||||||| | | ||||| ||||
gcaagcacacacacaaacacattgcactgcgcaccgtcgtcttcctcgtcgacggcgacgaccatgtgagcgcggcgtcgatggcaatgcagGTGGGCGACCCAACGAAGGACCACGGGTGCTGGGAGCGGCCGGAGGACATGGACACAGCGAGGACGGTGTACAACATCAGCGCGGCGAGGCCGGGGTCGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcgctgaaaaaaagtgctgtgcacgggcaatgcatgcagGTGGGCGATCCGTGGAAGGATCACGACTGCTGGGAGAGGCCGGAGGACATGGACACGGACCGCACGGTGTACAACGTCAGCGCGGGGCGCCCGGGCTCGG
                                                 tgaaaaaaa  TA-rich tract