Sequence
atgc intronic sequence ATGC exonic sequence...tttttcttgatgcacccaaatgattttttttttgttcctctacattcatgtgccaggatttcgaacagttcttgtagctaatatcttcatttcataatagGCATGCTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACCGGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G048150_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g36110.4 (Oryza sativa), 3'ss of exon 1
tttttcttgatgcacccaaatgattttttttttgttcctctacattcatgtgccaggatttc----gaacagttcttgta-gctaatatcttcatttcataatagGCATGCTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACCGGATG
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---ttctgttttcacccaaatgagttatacttc--tcctgtccatgcatgtgctaaattatcttcaaaatagtagttctgtgcttaaccttgtatgattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatgtgccaggatttcgaacagttcttgtagctaatatcttcatttcataatagGCATGCTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACCGGATG
agctaat putative branch site (score: 3)
tcttcatttc CT-rich tract
taatatcttcatttca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttcttgatgcacccaaatgattttttttttgttcctctacattcatgtgccaggatttcgaacagttcttgtagctaatatcttcatttcataatagGCATGCTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACCGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - gatgcac
- - - - - - - - - - - - - - - - tgttcct
- - - - - - - - - - - - - - - - - - - - - -attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - tgccagg