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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggcgtctgcgatgtatactttttggggatcaagaaaactagagaaaattattcaaattcaaaataaatgtcagcttattttgggtttatgatacaagtttcactgtgcagATCTGTTCCAAAGGCTTTTCAGGCAAGATCTTCTTGTTGCTAGCCTCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCC

Basic information

species Zea mays
transcript GRMZM2G048067_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 3'ss of exon 7
gtatggcgtctgcgatg-tatactttttggggatcaagaaaactagagaaaattattcaaattcaaaataaatgtcagcttattttgggtttatgatacaagtttcactgtgcagATCTGTTCCAAAGGCTTTTCAGGCAAGATCTTCTTGTTGCTAGCCTCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCC
           |   || ||  | |||| |  |  |  ||  | || ||   | | |    |||  | | | | ||   ||| | ||   ||||||| ||| |||||||| |||||||| |||||||| ||||||||||| |||||| | |||||||| |||||||| |||||||| |||||||||||||||||||| || ||||||||||| ||
-----------gtactgatagtcgttttagttacaattaatgccagtga---tcaattgctttctcattcattttct-tttaatctg---ttatgattcaactttcactgcgcagATCTATTCCAAAGACTTTTCAGGCAGGATCTTTTGGTTGCTAGTCTCTTTCGCAACTTCTTACTTGCTGAGAGAATCATGCGGTCCGCAAATTGTTCCCC

upper sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 3'ss of exon 6
gtatggcgtctgcgatg-tatactttttggggatcaagaaaactagagaaaattattcaaattcaaaataaatgtcagcttattttgggtttatgatacaagtttcactgtgcagATCTGTTCCAAAGGCTTTTCAGGCAAGATCTTCTTGTTGCTAGCCTCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCC
           |   || ||  | ||||    |  |  ||  | || ||   | | |    |||  | | | | ||   ||| | ||   ||||||| ||| |||||||  |||||||| |||||||| ||||||||||| |||||| | |||||||| |||||||| |||||||| |||||||||||||||||||| || ||||||||||| ||
-----------gtactgatagtcattttaatcacaattaatgccagtga---tcaattgctttctcattcattttct-tttaatctg---ttatgattcaactttcactacgcagATCTATTCCAAAGACTTTTCAGGCAGGATCTTTTGGTTGCTAGTCTCTTTCGCAACTTCTTACTTGCTGAGAGAATCATGCGGTCCGCAAATTGTTCCCC

upper sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 7
gtatggcgtctgcgatgtata-ctttttggggatcaagaaaactagagaaaattattcaa--attcaaaataaatgtcagcttattttgggtttatgatacaagt-------------ttcactgtgcagATCTGTTCCAAAGGCTTTTCAGGCAAGATCTTCTTGTTGCTAGCCTCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCC
||| ||  ||  |  |    | | || ||  ||   |  ||| ||       || ||     ||    | | | |        ||||| ||| | | | |    |             | |||| ||||||||| || || || || ||||| || ||| | |||||||| || || ||||| || ||  | ||||||||| ||||||||||||| ||||||||||||||
gta-ggtctcaaccctccccatccttctgccgacttactaaattaacatggtttttttttccatctccagtgatttagcatgcatttttggtatcttacattgatcattattttgttctgcactctgcagATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCC

upper sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA18G44210.1 (Glycine max), 3'ss of exon 7
gtatggcgtctgcgatgtata-ctttttggggatcaagaaaactag-agaaaattattcaa------------attcaaaata-aatgtcagc-ttattttgggttta---tgatacaagtttcactgtgcagATCTGTTCCAAAGGCTTTTCAGGCAAGATCTTCTTGTTGCTAGCCTCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCC
||| ||  ||  |  |   || | || ||  ||      ||| ||  |    ||| ||  |            |||||  ||  ||| |  |  || |||| |  |||   ||||     |||   | ||||||||| || || || || ||||| || ||| | |||||||| || || ||||| || ||  | ||||||||| ||||||||||||| ||||||||||||||
gta-ggtctcaactctccctatccttctgctgacttgctaaattaacatggtatttttttagcatctccagtgattcagcatgcaattttggtattttttttgtcttacattgatcattattttgttctgcagATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCC

upper sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 7
gtatggcgtctgcgatgtatactttttggggatcaagaaaactagagaaaattattcaaattcaaaataaatgtcagcttattttgggtttatg-atacaagtttcactgtgcagATCTGTTCCAAAGGCTTTTCAGGCAAGATCTTCTTGTTGCTAGCCTCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCC
|||       ||   |    | ||| ||  |    || || |    |  || | || || ||     | | | ||  ||||   ||| | |||| |||    |||     ||||||||| || || ||  | ||||||||||| ||  | ||||| || || ||||| || ||||| |||||||||||||| |||||||| ||||| ||||| ||
gtaatttaattggcttactgattttatgcagcatgagcaatcagctgttaaatttttaa-tttgtttttattctc--cttacggtgg-tatatgcatatttattttgtgctgcagATCTTTTTCAGAGATTGTTCAGGCAAGACCTGTTAGTTGCCAGTCTGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCC

upper sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 7
lower sequence: PP1S26_271V6.1 (Physcomitrella patens), 3'ss of exon 7
--------------------------------------------------------------------gtatggcgtctgcgatgtatactttttggggatcaagaa-aactagagaaaattattcaaattcaa-----aataaatgtcagcttattttggg-tttatgatacaagtttcactg-tgcagATCTGTTCCAAAGGCTTTTCAGGCAAGATCTTCTTGTTGCTAGCCTCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCC
                                                                     |   || ||  |  | || |   ||||    | | |   |||   |   || | | || | |        | | | |||| ||  | |   |  ||||  ||   |   | |    |||||| ||||| ||  || | ||| ||||||||||||||||||| ||| | ||||| || |||||||| |||||  | || ||| | || || || || | |||
gtaagtaacctgaatctccttattcgattttattcgctgtatttattatttatttatttatttattgaatgcagcatcaacagt-tagataatttgacctttaggtgtaacattaaccaactgtgcagacttggctggtattcagtgtccgcgaactcgagcctttaacatctgaaacttatgaatgcagAGCTGTTTCAGCGGTTGTTCCGGCAAGATCTTCTTGTTGCCAGCTTGTTTCGGAATTTCTTGCTGGCTGAACGTATTATGAGGTCTGCTAACTGCTGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcaaaataaatgtcagcttattttgggtttatgatacaagtttcactgtgcagATCTGTTCCAAAGGCTTTTCAGGCAAGATCTTCTTGTTGCTAGCCTCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCC
                                          tttcact  CT-rich tract
     aaataaatgt  TA-rich tract