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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagccgtgtagtgacgcgaagggttgtggcgtgcttccggatttgtgttgtattgattgattggtgttctcccggatttgtgctgttttgattgatgttatggctcgtcaatcggcgtggtgttctggacgtggtttaccatcgtcttttcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGGTCGGCACCATAAGATTGCTCGCTG

Basic information

species Zea mays
transcript GRMZM2G047894_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71428423|gb|DR809473.1|DR809473
EST:     CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAG                         AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
genomic: CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgt ... tcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
EST: gi|211511662|gb|FL408088.1|FL408088
EST:     CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAG                         AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGGGTGG
genomic: CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgt ... tcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
EST: gi|211285033|gb|FK988595.1|FK988595
EST:     CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAG                         AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
genomic: CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgt ... tcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
EST: gi|211199436|gb|FL401716.1|FL401716
EST:     CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAG                         AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGGGTGG
genomic: CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgt ... tcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
EST: gi|211223965|gb|FL409228.1|FL409228
EST:     CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAG                         AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGGGTGG
genomic: CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgt ... tcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
EST: gi|211348875|gb|FL413241.1|FL413241
EST:     CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAG                         AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGGGTGG
genomic: CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgt ... tcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
EST: gi|78086850|gb|DV515243.1|DV515243
EST:     CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAG                         AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
genomic: CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgt ... tcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
EST: gi|211285032|gb|FK988594.1|FK988594
EST:     CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAG                         AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGGGTGG
genomic: CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgt ... tcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
EST: gi|71325385|gb|DR799370.1|DR799370
EST:     CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAG                         AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
genomic: CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgt ... tcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtcaatcggcgtggtgttctggacgtggtttaccatcgtcttttcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGGTCGGCACCATAAGATTGCTCGCTG
                                     tcgtcttttc  CT-rich tract