1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcttgcttttgcttcgacacgaagcatccctgataactgacgcccctgcttgttttctgtgtctgaaattcttctgttgcctgacttgttgttgagccagAGACTGGGACCTTCAAAGAGCAATAGGACTCATGGAGGTTGGAGACGCAAGAAACGGTTCTGCAGCAGCGGCACTGACAAAGGGAGGTGCGGATGATGCC
species | Zea mays |
transcript | GRMZM2G047867_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCGCCATCGCTCTCGTCCTCGCCGATCGATCCAAG AGACTGGGACCTTCAAAGAGCAATAGGACTCATGGAGGTTGGAGACGCAAGEST: gi|32919513|gb|CF024325.1|CF024325
genomic: TGCGCCATCGCTCTCGTCCTCGCCGATCGATCCAAGgtaagcgaga ... gttgagccagAGACTGGGACCTTCAAAGAGCAATAGGACTCATGGAGGTTGGAGACGCAAG
EST: TACCTCTATTCCGGTGCGCCATCGCTCTCGTCCTCGCTGATCGATCCAAG AGACTGGGACCTTCAAAGAGCAATAGGACTCATGGAGGTTGGAGACGCAAGEST: gi|24934961|gb|BQ619375.2|BQ619375
genomic: TACCTCCATTCCGGTGCGCCATCGCTCTCGTCCTCGCCGATCGATCCAAGgtaagcgaga ... gttgagccagAGACTGGGACCTTCAAAGAGCAATAGGACTCATGGAGGTTGGAGACGCAAG
EST: CGGTGCGCCATCGCTCTCGTCCTCGCCGATCGATCCAAG AGACTGGGACCTTCAAAGAGCAATAGGACTCATGGAGGTTGGAGACGCAAGEST: gi|88757557|gb|DY541698.1|DY541698
genomic: CGGTGCGCCATCGCTCTCGTCCTCGCCGATCGATCCAAGgtaagcgaga ... gttgagccagAGACTGGGACCTTCAAAGAGCAATAGGACTCATGGAGGTTGGAGACGCAAG
EST: TGCGCCATCGCTCTCGTCCTCGCCGATCGATCCAAG AGACTGGGACCTTCAAAGAGCAATAGGACTCATGGAGGTTGGAGACGCAAG
genomic: TGCGCCATCGCTCTCGTCCTCGCCGATCGATCCAAGgtaagcgaga ... gttgagccagAGACTGGGACCTTCAAAGAGCAATAGGACTCATGGAGGTTGGAGACGCAAG
ctgcttgttttctgtgtctgaaattcttctgttgcctgacttgttgttgagccagAGACTGGGACCTTCAAAGAGCAATAGGACTCATGGAGGTTGGAGACGCAAGAAACGGTTCTGCAGCAGCGGCACTGACAAAGGGAGGTGCGGATGATGCC
gcctgac putative branch site (score: 61)
aaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttgcttttgcttcgacacgaagcatccctgataactgacgcccctgcttgttttctgtgtctgaaattcttctgttgcctgacttgttgttgagccagAGACTGGGACCTTCAAAGAGCAATAGGACTCATGGAGGTTGGAGACGCAAGAAACGGTTCTGCAGCAGCGGCACTGACAAAGGGAGGTGCGGATGATGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - ttttgct
- - - - - - - - acacgaa
- - - - - - - - - - - -gcatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgc