1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaatgctgtcaatgtaaattctaaatttctggtggcccttcgatagttcgattgacagtgttttttctggtgatactgactttttctgtttttttttcagGCCACTCATATCACTTGCTTATCCTCT
species | Zea mays |
transcript | GRMZM2G047860_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGG GCCACTCATATCACTTGCTTATCCTCTEST: gi|32808662|gb|CD960896.1|CD960896
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: GATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGG GCCACTCATATCACTTGCTTATCCTCTEST: gi|211371978|gb|FL186723.1|FL186723
genomic: GATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGG GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT
gttcgattgacagtgttttttctggtgatactgactttttctgtttttttttcagGCCACTCATATCACTTGCTTATCCTCT
tactgac putative branch site (score: 73)
ctgactttttctgttt CT-rich tract
tttttctgtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgctgtcaatgtaaattctaaatttctggtggcccttcgatagttcgattgacagtgttttttctggtgatactgactttttctgtttttttttcagGCCACTCATATCACTTGCTTATCCTCT
- -tgctgtc
- - - - - - - - - - - - - - ctggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatactg