Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatgctgtcaatgtaaattctaaatttctggtggcccttcgatagttcgattgacagtgttttttctggtgatactgactttttctgtttttttttcagGCCACTCATATCACTTGCTTATCCTCT

Basic information

species Zea mays
transcript GRMZM2G047860_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211371979|gb|FL186724.1|FL186724
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|32808662|gb|CD960896.1|CD960896
EST:     GATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: GATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|47961761|gb|CN844470.1|CN844470
EST:     TCCGGATNTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|211371978|gb|FL186723.1|FL186723
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|94472096|gb|EB701054.1|EB701054
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|76014693|gb|DT941863.1|DT941863
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|86465815|gb|DY232188.1|DY232188
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCTATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcgattgacagtgttttttctggtgatactgactttttctgtttttttttcagGCCACTCATATCACTTGCTTATCCTCT
                            tactgac  putative branch site (score: 1)
                              ctgactttttctgttt  CT-rich tract
                                   tttttctgtttttttt  TA-rich tract