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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgatgtggcagcacgtgattttcatttcctgcagtgtatgacggtatcatgacctggattttgttggctggctcgtttgtggcgcagGCGGGGGATGTGGCATTCGAGGTGTCAATGTCCCTCGTCGTTACGCTTGAGCGGGTGCTCGGGGATGAATCAATCG

Basic information

species Zea mays
transcript GRMZM2G047695_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047695_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g13460.1 (Oryza sativa), 3'ss of exon 1
gttgatgtggcagcacgtgattttcatttcctgcagtgtatgacggtatcatgacctggattttgttggctg-gctcgtttgtggcgcagGCGGGGGATGTGGCATTCGAGGTGTCAATGTCCCTCGTCGTTACGCTTGAGCGGGTGCTCGGGGATGAATCAATCG
     || |  |||| | |    |  ||    |  |  |  |  ||||  |||   ||   | | ||| ||| | | |  |||   |||||| ||||||||||| ||||||||| | ||||| |||||||| ||||| ||| |||||||||| || || ||  |||
----gtgcgttagcaagcggggat--ttcggggttgattccggtggtaa-atggtgtgagatct-ttgactgtggtgggctgt--tgcagGCTGGGGATGTGGCGTTCGAGGTGCCCATGTCGCTCGTCGTCACGCTGGAGAGGGTGCTCGGAGACGAGTCCGTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgtatgacggtatcatgacctggattttgttggctggctcgtttgtggcgcagGCGGGGGATGTGGCATTCGAGGTGTCAATGTCCCTCGTCGTTACGCTTGAGCGGGTGCTCGGGGATGAATCAATCG
                                       ctcgttt  CT-rich tract
                         attttgtt  TA-rich tract