1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acttctctagatgtcctgtttatatctttcttcccttggaacttttatttattagccttttgagcttcagtaacatagttcggttactacatgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAAGTGTCAAGTGTATTCTTGTGGAAAGCAGCTCTTCTCGTGCCTTCTCAGC
species | Zea mays |
transcript | GRMZM2G047564_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCG AAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAAEST: gi|211063903|gb|FL196767.1|FL196767
genomic: CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatgg ... atgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
EST: CGCCGTCATAACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCG AAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAAEST: gi|211063902|gb|FL196766.1|FL196766
genomic: CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatgg ... atgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
EST: CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCG AAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAAEST: gi|211063911|gb|FL196775.1|FL196775
genomic: CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatgg ... atgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
EST: CGCCGTCATAACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCG AAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAAEST: gi|211180614|gb|FL196781.1|FL196781
genomic: CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatgg ... atgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
EST: CGCCGTCATAACGCTCGACCGACCCAAGGCCCTCAACGCAATGAACCTCG AAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAAEST: gi|211180621|gb|FL196788.1|FL196788
genomic: CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatgg ... atgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
EST: CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCG AAATGGATGTTAGATACAAGGNACTTCTTGATGAATGGGAAACAAATCCEST: gi|211180619|gb|FL196786.1|FL196786
genomic: CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatgg ... atgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCC
EST: GCSK-CAATAACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCG AAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
genomic: GCCGTCA-TCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatgg ... atgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
tatttattagccttttgagcttcagtaacatagttcggttactacatgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAAGTGTCAAGTGTATTCTTGTGGAAAGCAGCTCTTCTCGTGCCTTCTCAGC
cagtaac putative branch site (score: 2)
taacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttctctagatgtcctgtttatatctttcttcccttggaacttttatttattagccttttgagcttcagtaacatagttcggttactacatgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAAGTGTCAAGTGTATTCTTGTGGAAAGCAGCTCTTCTCGTGCCTTCTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC