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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttctgttctcaatatcagattatcagtgtgacgtgtgttgcatggtagctgtcttttgtttaattctctaaaactttgtgtcaatgttttttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCCATATTAAAAAAGTTTCCAGAGCATGGTG

Basic information

species Zea mays
transcript GRMZM2G047093_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047093_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g43030.2 (Oryza sativa), 3'ss of exon 1
--gttctgttctcaatatcagattatcagtgtgacgtg-tgttgcat-ggtagctgtcttttgtttaattctctaaaactttgtgtcaatgttttttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCCATATTAAAAAAGTTTCCAGAGCATGGTG
   | || |  | |||| |||  | |   |||| | |  ||||  || |||     | |   ||       ||   |    ||| |  ||||||   |  |||||||||||| ||||| |||||||||||||| || || ||||| ||||||||||| ||||| ||||| || |||||||| |
atatgctctgtttaataacagtgtgtatttgtgtcattctgttaaattggttatcatttcacgtgctgcattcatga----tgttttcatgtttgcacatacagAAATCCTATGAGACAAAGCAATATAAGAAGGGCCTGAAGGCAGCAGATTCCATTTTAAAGAAGTTCCCTGAGCATGGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211146407|gb|FL424906.1|FL424906
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211081604|gb|FL369109.1|FL369109
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211506963|gb|FL409463.1|FL409463
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211336560|gb|FL394810.1|FL394810
EST:     CCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: CCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211005424|gb|FL371737.1|FL371737
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211307138|gb|FL392844.1|FL392844
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211245310|gb|FL400476.1|FL400476
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211087316|gb|FL378414.1|FL378414
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211351636|gb|FL428918.1|FL428918
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211202659|gb|FL427925.1|FL427925
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211298871|gb|FL392442.1|FL392442
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211434149|gb|FL401078.1|FL401078
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211351633|gb|FL428915.1|FL428915
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211210031|gb|FL411368.1|FL411368
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGNTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211144252|gb|FL374571.1|FL374571
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|76013182|gb|DT940352.1|DT940352
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211039363|gb|FL382061.1|FL382061
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211065683|gb|FL394004.1|FL394004
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211204324|gb|FL385639.1|FL385639
EST:     GCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: GCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211156640|gb|FL401280.1|FL401280
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211166060|gb|FL381601.1|FL381601
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211303363|gb|FL404498.1|FL404498
EST:     CCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCNTCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: CCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211517987|gb|FL372292.1|FL372292
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211112730|gb|FL370881.1|FL370881
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211461654|gb|FL410743.1|FL410743
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211506957|gb|FL409457.1|FL409457
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211339025|gb|FL403590.1|FL403590
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211184480|gb|FL377621.1|FL377621
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211095044|gb|FL395908.1|FL395908
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211298413|gb|FL370612.1|FL370612
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211324007|gb|FL416239.1|FL416239
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211037251|gb|FL404714.1|FL404714
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211493470|gb|FL389418.1|FL389418
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211223503|gb|FL389609.1|FL389609
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211040054|gb|FL419095.1|FL419095
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211063544|gb|FL410481.1|FL410481
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211223370|gb|FL377258.1|FL377258
EST:     GGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCNATC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTC
genomic: GGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATC-GTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTC
EST: gi|211002643|gb|FL371723.1|FL371723
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211366005|gb|FL393803.1|FL393803
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211169425|gb|FL381638.1|FL381638
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211202318|gb|FL411791.1|FL411791
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
EST: gi|211154940|gb|FL392737.1|FL392737
EST:     TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTC                         AAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC
genomic: TGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 179

CCTTGCCCCGCCCTAGGGTTCGCGCCGCCGCGCTGACCCTGTCGTAGCCATGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCCATATTAAAAAAGTTTCCAGAGCATGGTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 145

CCTTGCCCCGCCCTAGGGTTCGCGCCGCCGCGCTGACCCTGTCGTAGCCATGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCCATATTAAAAAAGTTTCCAGAGCATGGTG


Block sizes: 44 (upstream exon), 47 (downstream exon)
Score: 88

CCTTGCCCCGCCCTAGGGTTCGCGCCGCCGCGCTGACCCTGTCGTAGCCATGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCCATATTAAAAAAGTTTCCAGAGCATGGTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 213

CCTTGCCCCGCCCTAGGGTTCGCGCCGCCGCGCTGACCCTGTCGTAGCCATGGGGTCCTCGCTCCCGCCCAAGGAAGCCAACCTCTTCAAAGTCATCGTCgtaagcaccc ... tttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCCATATTAAAAAAGTTTCCAGAGCATGGTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagctgtcttttgtttaattctctaaaactttgtgtcaatgttttttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCCATATTAAAAAAGTTTCCAGAGCATGGTG
                     ctctaaa  putative branch site (score: 213)
                                        tgttttttccc  putative PPT
              tttaattctctaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttctgttctcaatatcagattatcagtgtgacgtgtgttgcatggtagctgtcttttgtttaattctctaaaactttgtgtcaatgttttttcccacagAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCCATATTAAAAAAGTTTCCAGAGCATGGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
-ttctgtt
- - - - - - - - - - - - - - - - - - - -tgcatgg