1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttagaacagattctgtacagcaactcgtggaaacaaatctgcttccttaatgatgttgcttgttttaacaaatgcggcatcgggcgagcttttctgtagGTAGAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG
species | Zea mays |
transcript | GRMZM2G047055_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCG GTAGAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGGEST: gi|211074261|gb|FL177903.1|FL177903
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGgtaaccgtct ... ttttctgtagGTAGAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGG
EST: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGWTCCCCCACTACTCCG GTAGAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCKACAACGGEST: gi|211274215|gb|FL334361.1|FL334361
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGgtaaccgtct ... ttttctgtagGTAGAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGG
EST: TCCCCCACTACTCCG GTAGAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCNACAACGG
genomic: TCCCCCACTACTCCGgtaaccgtct ... ttttctgtagGTAGAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGG
ccttaatgatgttgcttgttttaacaaatgcggcatcgggcgagcttttctgtagGTAGAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG
ttttaac putative branch site (score: 2)
cttttctgt putative PPT
ttgttttaacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagaacagattctgtacagcaactcgtggaaacaaatctgcttccttaatgatgttgcttgttttaacaaatgcggcatcgggcgagcttttctgtagGTAGAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - -gattctg
- - - - - - - - - cagcaac
- - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cggcatc