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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaacagattctgtacagcaactcgtggaaacaaatctgcttccttaatgatgttgcttgttttaacaaatgcggcatcgggcgagcttttctgtaggtagAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG

Basic information

species Zea mays
transcript GRMZM2G047055_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047055_T03 (Zea mays), 3'ss of exon 1
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
-------gaacagattctgtacagcaactcgtg-gaaacaaatctgcttccttaatgatgttgcttgttttaacaaa----tgcggcatcgggcgagcttttctgtaggtagAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG
       ||     |||||||| |       || || |||  | |     |  ||   |  ||||  ||  ||| ||    | | | |  ||  | ||   || |||  ||  |||||||||||| ||||||  | |||||| | || |||||||| |||||||| |||||||||
cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaatttactgctccttagaactaaaatcttctgaaatggttgggcagGTCGGTAT-TAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21626441|gb|BQ621362.1|BQ621362
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211228782|gb|FL333488.1|FL333488
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|149051760|gb|EE155884.2|EE155884
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211284882|gb|FL322123.1|FL322123
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211417160|gb|FL337255.1|FL337255
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|14646089|gb|BI180278.1|BI180278
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211137844|gb|FL308428.1|FL308428
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211308613|gb|FL359643.1|FL359643
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|149071878|gb|EE160266.2|EE160266
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|67010753|gb|CO439502.1|CO439502
EST:     AGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGG                         T
genomic: AGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC-Ggtaaccgtct ... ctgtaggtag-
EST: gi|67010753|gb|CO439502.1|CO439502
EST:     AGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGG                         T
genomic: AGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC-Ggtaaccgtct ... ctgtaggtag-
EST: gi|149084457|gb|EE173915.2|EE173915
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211276374|gb|FL349482.1|FL349482
EST:     CTGAWGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211127610|gb|FL312979.1|FL312979
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211033328|gb|FL329838.1|FL329838
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGHTCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|148982853|gb|EE028703.2|EE028703
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211510130|gb|FL332886.1|FL332886
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211489414|gb|FL341329.1|FL341329
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|148994990|gb|EE034323.2|EE034323
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211501025|gb|FL354363.1|FL354363
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211414556|gb|FL336307.1|FL336307
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211200450|gb|FL329073.1|FL329073
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211108686|gb|FL330275.1|FL330275
EST:     TGAWGCTCACCGCACCTCCCCTCCTCGCCGCGGAWTCCCCCACTACTCCGGTAG                      
genomic: TGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGA-TCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211255102|gb|FL319908.1|FL319908
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|148930172|gb|EC872554.2|EC872554
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211412636|gb|FL355729.1|FL355729
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211137851|gb|FL308435.1|FL308435
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211029015|gb|FL358146.1|FL358146
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|26454978|gb|CA826561.1|CA826561
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211265523|gb|FL352308.1|FL352308
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211383325|gb|FL328266.1|FL328266
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|149077342|gb|EE166021.2|EE166021
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|148995731|gb|EE034959.2|EE034959
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|149107328|gb|EE189209.2|EE189209
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211362602|gb|FL353323.1|FL353323
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|149100531|gb|EE186614.2|EE186614
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|149085206|gb|EE174712.2|EE174712
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|149009778|gb|EE041676.2|EE041676
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211115879|gb|FL364761.1|FL364761
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211310747|gb|FL364529.1|FL364529
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211118708|gb|FL311648.1|FL311648
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|149078654|gb|EE167442.2|EE167442
EST:     CGGATCCCCCACTACTCCGGTAG                      
genomic: CGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211189092|gb|FL366155.1|FL366155
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|21480945|gb|BQ577628.1|BQ577628
EST:     CTG-AGCTCA-CGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211497957|gb|FL337380.1|FL337380
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211468474|gb|FL364654.1|FL364654
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|149000237|gb|EE037385.2|EE037385
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211424733|gb|FL330502.1|FL330502
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|148983077|gb|EE028990.2|EE028990
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|31998517|gb|CD662114.1|CD662114
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211329544|gb|FL365345.1|FL365345
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|13150492|gb|BG320814.1|BG320814
EST:     GCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: GCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211117919|gb|FL311641.1|FL311641
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|67041299|gb|CO467554.1|CO467554
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGTCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211304151|gb|FL338804.1|FL338804
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211189094|gb|FL366157.1|FL366157
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211220928|gb|FL350856.1|FL350856
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|148945800|gb|EC891086.2|EC891086
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211328972|gb|FL342487.1|FL342487
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211137911|gb|FL317648.1|FL317648
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|149109424|gb|EE190193.2|EE190193
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211306181|gb|FL338821.1|FL338821
EST:     CTGAWGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCG                         AAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCNACAACGGAACT
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGgtaaccgtct ... ctgtaggtagAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACT
EST: gi|211010900|gb|FL365575.1|FL365575
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211515169|gb|FL354449.1|FL354449
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGWTCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211377465|gb|FL308230.1|FL308230
EST:     CTGARGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|148950007|gb|EC895535.2|EC895535
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211383319|gb|FL328260.1|FL328260
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211534885|gb|FL340873.1|FL340873
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|21330355|gb|BQ485736.1|BQ485736
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211378527|gb|FL350961.1|FL350961
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211497305|gb|FL313417.1|FL313417
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211024059|gb|FL356240.1|FL356240
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211049846|gb|FL341775.1|FL341775
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211206026|gb|FL351340.1|FL351340
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211465914|gb|FL363698.1|FL363698
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|21329806|gb|BQ485187.1|BQ485187
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211331708|gb|FL365359.1|FL365359
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211267965|gb|FL352331.1|FL352331
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211056212|gb|FL359445.1|FL359445
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211226958|gb|FL345070.1|FL345070
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211027991|gb|FL313949.1|FL313949
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211383942|gb|FL357067.1|FL357067
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|149111379|gb|EE294882.2|EE294882
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|22545163|gb|BU097522.1|BU097522
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211326785|gb|FL341536.1|FL341536
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|9953930|gb|BE640513.1|BE640513
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211540517|gb|FL328450.1|FL328450
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211210338|gb|FL310327.1|FL310327
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|149061171|gb|EE157430.2|EE157430
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211542934|gb|FL308351.1|FL308351
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|22545391|gb|BU097750.1|BU097750
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211096258|gb|FL335586.1|FL335586
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211311724|gb|FL309482.1|FL309482
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|148941700|gb|EC886651.2|EC886651
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|148943327|gb|EC888385.2|EC888385
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|21329929|gb|BQ485310.1|BQ485310
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|148947214|gb|EC892565.2|EC892565
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|5566846|gb|AI881757.1|AI881757
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211116637|gb|FL357337.1|FL357337
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211028138|gb|FL319701.1|FL319701
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211052845|gb|FL343191.1|FL343191
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211407464|gb|FL353808.1|FL353808
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|148974464|gb|EE025245.2|EE025245
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|149014382|gb|EE043976.2|EE043976
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211139256|gb|FL362151.1|FL362151
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211136253|gb|FL346221.1|FL346221
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211139738|gb|FL308463.1|FL308463
EST:     CTGAWGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|211162100|gb|FL336074.1|FL336074
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGKNTCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|149059474|gb|EE156959.2|EE156959
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|148941518|gb|EC886449.2|EC886449
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg
EST: gi|149041331|gb|EE046968.2|EE046968
EST:     CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGGTAG                      
genomic: CTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCC----Ggtaaccgtct ... ctgtagg

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 40 (upstream exon), 49 (downstream exon)
Score: 21

CGAATCATCACTACCACCGCTCTCTCTTCCTCTCCTCCATCTCTCAACGCCTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGgtaaccgtct ... ctgtaggtagAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 6

CGAATCATCACTACCACCGCTCTCTCTTCCTCTCCTCCATCTCTCAACGCCTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGgtaaccgtct ... ctgtaggtagAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 55

CGAATCATCACTACCACCGCTCTCTCTTCCTCTCCTCCATCTCTCAACGCCTGAAGCTCACCGCACCTCCCCTCCTCGCCGCGGATCCCCCACTACTCCGgtaaccgtct ... ctgtaggtagAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgatgttgcttgttttaacaaatgcggcatcgggcgagcttttctgtaggtagAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG
              ttttaac  putative branch site (score: 55)
                                        cttttctgt  putative PPT
           ttgttttaacaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaacagattctgtacagcaactcgtggaaacaaatctgcttccttaatgatgttgcttgttttaacaaatgcggcatcgggcgagcttttctgtaggtagAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - -gattctg
- - - - - - - cagcaac
- - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - aacaaat
- - - - - - - - - - - - - - - - - -ctgcttc
- - - - - - - - - - - - - - - - - - - - - - - -tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cggcatc