1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcatattgataagcctttaattattttgcaaacataactttattatgcgcagactgagtgacaaatatcgttcatggttaacctggtatattttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGATG
species | Zea mays |
transcript | GRMZM2G046098_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGAEST: gi|40287177|gb|CK327569.1|CK327569
genomic: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
EST: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GNATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGAEST: gi|51871146|gb|CV126030.1|CV126030
genomic: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
EST: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGAEST: gi|211391866|gb|FL013594.1|FL013594
genomic: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
EST: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGAEST: gi|50336995|gb|CO532121.1|CO532121
genomic: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
EST: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGAEST: gi|91053372|gb|EB163790.1|EB163790
genomic: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
EST: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGAEST: gi|50323815|gb|CO518941.1|CO518941
genomic: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
EST: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGAEST: gi|88755429|gb|DY539570.1|DY539570
genomic: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
EST: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGAEST: gi|42491828|gb|CK700874.1|CK700874
genomic: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
EST: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGAEST: gi|74239462|gb|DT647376.1|DT647376
genomic: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
EST: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGAEST: gi|28910665|gb|CB331552.1|CB331552
genomic: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
EST: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGAEST: gi|76293651|gb|DV033219.1|DV033219
genomic: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
EST: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGAEST: gi|42491878|gb|CK700924.1|CK700924
genomic: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
EST: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGAEST: gi|148944675|gb|EC889811.2|EC889811
genomic: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
EST: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGAEST: gi|40287192|gb|CK327584.1|CK327584
genomic: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
EST: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGNTGGGTCNNAAGAAAATTTATGACTGGAEST: gi|148949550|gb|EC895017.2|EC895017
genomic: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
EST: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAG GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
genomic: CAGCCAAGTCGCCGCCGCGACCCAGCTCGCCCACCACCTCCACACGCAAGgtccggatct ... ttttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGA
tgcgcagactgagtgacaaatatcgttcatggttaacctggtatattttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGATG
ggttaac putative branch site (score: 3)
tatattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatattgataagcctttaattattttgcaaacataactttattatgcgcagactgagtgacaaatatcgttcatggttaacctggtatattttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA