1 5' 3' | 2 5' 3' | 3 5' 3' |
gtataacgacgacgctgcctgctcgctcgctcgctcgcttccttgctcactcaagctgctatgctgtgctctgccctgctgtatactgacggcggcatcgtttctgtttcttggccatggcagCAACAACATCCTGTACCCCAAGGAGGACCGGGAGCAGAAGGTGCTCCTCTACGCCTGCCGGAACTGCGACCACCAG
species | Zea mays |
transcript | GRMZM2G046061_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCGCTCGTCAGCTAGCAGCCATGAGTACCATGAAGTTTTGCCGTGAATG CAACAACATCCTGTACCCCAAGGAGGACCGGGAGCAGAAGGTGCTCCTCTAEST: gi|211445287|gb|FL147048.1|FL147048
genomic: CCCGCTCGTCAGCTAGCAGCCATGAGTACCATGAAGTTTTGCCGTGAATGgtataacgac ... gccatggcagCAACAACATCCTGTACCCCAAGGAGGACCGGGAGCAGAAGGTGCTCCTCTA
EST: CCCGCTCGTCAGCTAGCAGCCATGAGTACCATGAAGTTTTGCCGTGAATG CAACAACATCCTGTACCCCAAGGAGGACCGGGAGCAGAAGGTGCTCCTCTAEST: gi|211445286|gb|FL147047.1|FL147047
genomic: CCCGCTCGTCAGCTAGCAGCCATGAGTACCATGAAGTTTTGCCGTGAATGgtataacgac ... gccatggcagCAACAACATCCTGTACCCCAAGGAGGACCGGGAGCAGAAGGTGCTCCTCTA
EST: CCCGCTCGTCAGCTAGCAGCCATGAGTACCATGAAGTTTTGCCGTGAATG CAACAACATCCTGTACCCCAAGGAGGACCGGGAGCAGAAGGTGCTCCTCTAEST: gi|211445281|gb|FL147042.1|FL147042
genomic: CCCGCTCGTCAGCTAGCAGCCATGAGTACCATGAAGTTTTGCCGTGAATGgtataacgac ... gccatggcagCAACAACATCCTGTACCCCAAGGAGGACCGGGAGCAGAAGGTGCTCCTCTA
EST: CCCGCTCGTCAGCTAGCAGCCATGAGTACCATGAAGTTTTGCCGTGAATG CAACAACATCCTGTACCCCAAGGAGGACCGGGAGCAGAAGGTGCTCCTCTAEST: gi|211445288|gb|FL147049.1|FL147049
genomic: CCCGCTCGTCAGCTAGCAGCCATGAGTACCATGAAGTTTTGCCGTGAATGgtataacgac ... gccatggcagCAACAACATCCTGTACCCCAAGGAGGACCGGGAGCAGAAGGTGCTCCTCTA
EST: CCCGCTCGTCAGCTAGCAGCCATGAGTACCATGAAGTTTTGCCGTGAATG CAACAACATCCTGTACCCCAAGGAGGACCGGGAGCAGAAGGTGCTCCTCTAEST: gi|211445284|gb|FL147045.1|FL147045
genomic: CCCGCTCGTCAGCTAGCAGCCATGAGTACCATGAAGTTTTGCCGTGAATGgtataacgac ... gccatggcagCAACAACATCCTGTACCCCAAGGAGGACCGGGAGCAGAAGGTGCTCCTCTA
EST: CCCGCTCGTCAGCTAGCAGCCATGAGTACCATGAAGTTTTGCCGTGAATG CAACAACATCCTGTACCCCAAGGAGGACCGGGAGCAGAAGGTGCTCCTCTA
genomic: CCCGCTCGTCAGCTAGCAGCCATGAGTACCATGAAGTTTTGCCGTGAATGgtataacgac ... gccatggcagCAACAACATCCTGTACCCCAAGGAGGACCGGGAGCAGAAGGTGCTCCTCTA
ctctgccctgctgtatactgacggcggcatcgtttctgtttcttggccatggcagCAACAACATCCTGTACCCCAAGGAGGACCGGGAGCAGAAGGTGCTCCTCTACGCCTGCCGGAACTGCGACCACCAG
tactgac putative branch site (score: 9)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataacgacgacgctgcctgctcgctcgctcgctcgcttccttgctcactcaagctgctatgctgtgctctgccctgctgtatactgacggcggcatcgtttctgtttcttggccatggcagCAACAACATCCTGTACCCCAAGGAGGACCGGGAGCAGAAGGTGCTCCTCTACGCCTGCCGGAACTGCGACCACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC