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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccagcggagtgaagatccacctaaattcattcggtttctcggattggagacctacagttttcccccgattctttttgtattggagatttatggataagaagtcgtggtgatcgatgcttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCTCGCCTCCGTCCCCCTCTCCGATGGCTGGCAGCAGCAGCGGCCCCGCCC

Basic information

species Zea mays
transcript GRMZM2G045331_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78123053|gb|DV541437.1|DV541437
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG                         TCGTGCATTTGATTTGAGATGGAAAATATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|76281973|gb|DV021541.1|DV021541
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG                         TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|78088708|gb|DV517101.1|DV517101
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG                         TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|60350887|gb|DN217860.1|DN217860
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCTGCGCGCCGGCAGCGACGGAG                         TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|149048884|gb|EE048384.2|EE048384
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG                         T--TG-AGTTGAG---A--TGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|31351237|gb|CD435594.1|CD435594
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCTGCGCGCCGGCAGCGACGGAG                         TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|78091209|gb|DV519583.1|DV519583
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG                         TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|211374626|gb|FK958606.1|FK958606
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG                         TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|71445883|gb|DR826933.1|DR826933
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG                         TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|211374622|gb|FK958602.1|FK958602
EST:     GTCCA-TTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG                         TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|211374623|gb|FK958603.1|FK958603
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG                         TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|211374624|gb|FK958604.1|FK958604
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCTGCGCGCCGGCAGCGACGGAG                         TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|76936740|gb|DV174858.1|DV174858
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG                         TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|31354815|gb|CD439172.1|CD439172
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCTGCGCGCCGGCAGCGACGGAG                         TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|211371968|gb|FK958598.1|FK958598
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCTGCGCGCCGGCAGCGACGGAG                         TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|211371970|gb|FK958600.1|FK958600
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG                         TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|74233595|gb|DT641509.1|DT641509
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG                         TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: gi|91056772|gb|EB167190.1|EB167190
EST:     GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG                         TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtattggagatttatggataagaagtcgtggtgatcgatgcttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCTCGCCTCCGTCCCCCTCTCCGATGGCTGGCAGCAGCAGCGGCCCCGCCC
                                            cttcgtt  CT-rich tract
           agatttat  TA-rich tract