1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...atctcaatggcttgtttacttagtttctgtgtggaggagggtaatattatgttctgtaccaagtattgaagcaaatatttcttttactcttacattgcagATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGCCCTTTTTTCTGGCCGCCAACGGTTTCAGCCAACGCATACCAGTGATGAA
species | Zea mays |
transcript | GRMZM2G045241_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACGGGCAGAGGAGACCCCTCAGGGCCGGGATCGGACTCCTCTTTCACCG ATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGCEST: gi|211128513|gb|FL073448.1|FL073448
genomic: GACGGGCAGAGGAGACCCCTCAGGGCCGGGATCGGACTCCTCTTTCACCGgtaagcatgc ... tacattgcagATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGC
EST: GACGGGCAGAGGAGACCCCTCAGGGCCGGGATCGGACTCCTCTTTCACCG ATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGCEST: gi|88752314|gb|DY536455.1|DY536455
genomic: GACGGGCAGAGGAGACCCCTCAGGGCCGGGATCGGACTCCTCTTTCACCGgtaagcatgc ... tacattgcagATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGC
EST: GACGGGCAGAGGAGACCCCTCAGGGCCGGGATCGGACTCCTCTTTCACCG ATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGCEST: gi|211128514|gb|FL073449.1|FL073449
genomic: GACGGGCAGAGGAGACCCCTCAGGGCCGGGATCGGACTCCTCTTTCACCGgtaagcatgc ... tacattgcagATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGC
EST: GACGGGCAGAGGAGACCCCTCAGGGCCGGGATCGGACTCCTCTTTCACCG ATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGCEST: gi|78117447|gb|DV535834.1|DV535834
genomic: GACGGGCAGAGGAGACCCCTCAGGGCCGGGATCGGACTCCTCTTTCACCGgtaagcatgc ... tacattgcagATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGC
EST: GACGGGCAGAGGAGACCCCTCAGGGCCGGGATCGGACTCCTCTTTCACCG ATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGCEST: gi|28361796|gb|CB240152.1|CB240152
genomic: GACGGGCAGAGGAGACCCCTCAGGGCCGGGATCGGACTCCTCTTTCACCGgtaagcatgc ... tacattgcagATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGC
EST: GACGGGCAGAGGAGACCCCTCAGGGCCGGGATCGGACTCCTCTTTCACCG ATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGCEST: gi|211128511|gb|FL073446.1|FL073446
genomic: GACGGGCAGAGGAGACCCCTCAGGGCCGGGATCGGACTCCTCTTTCACCGgtaagcatgc ... tacattgcagATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGC
EST: GACGGGCAGAGGAGACCCCTCAGGGCCGGGATCGGACTCCTCTTTCACCG ATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGC
genomic: GACGGGCAGAGGAGACCCCTCAGGGCCGGGATCGGACTCCTCTTTCACCGgtaagcatgc ... tacattgcagATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGC
attatgttctgtaccaagtattgaagcaaatatttcttttactcttacattgcagATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGCCCTTTTTTCTGGCCGCCAACGGTTTCAGCCAACGCATACCAGTGATGAA
ctcttac putative branch site (score: 3)
tatttcttttactctt CT-rich tract
aaatatttcttttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctcaatggcttgtttacttagtttctgtgtggaggagggtaatattatgttctgtaccaagtattgaagcaaatatttcttttactcttacattgcagATTTTTCCATGCACTTTAGGCTAAAAATGCTTTGGTCTGAAACCTATCTGCCCTTTTTTCTGGCCGCCAACGGTTTCAGCCAACGCATACCAGTGATGAA
- - - - - cttgttt
- - - - - - - - - - - - ttctgtg
- - - - - - - - - - - - - - - - - - - - - - - - -tgttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaagca