1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctgtcagaataggtttcattgatgcatggaccattttctagaagctcgtacgtagtaggagagagtgacactgtcaactaacagtatctagctgctgcagTCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTAGAGGAAGGGGAGATGAGCGCGCCGGCGGCGACGCCGAAGCAGGGCAAGT
species | Zea mays |
transcript | GRMZM2G044851_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATG TCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTAEST: gi|148987145|gb|EE030973.2|EE030973
genomic: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATGgttagtgcgt ... gctgctgcagTCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTA
EST: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATG TCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTAEST: gi|211540626|gb|FL330694.1|FL330694
genomic: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATGgttagtgcgt ... gctgctgcagTCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTA
EST: GCAGAGGCCATCGTCGAGTGTATCCAGTGGTCGAGAAGAGGGAAGAAATG TCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTAEST: gi|50328864|gb|CO523990.1|CO523990
genomic: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATGgttagtgcgt ... gctgctgcagTCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTA
EST: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATG TCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTAEST: gi|211020704|gb|FL318028.1|FL318028
genomic: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATGgttagtgcgt ... gctgctgcagTCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTA
EST: GCAGAGGCCATCGTCGAGTGTATCCAGTGGTCGAGAAGAGGGAAGAAATG TCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTAEST: gi|86474663|gb|DY241033.1|DY241033
genomic: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATGgttagtgcgt ... gctgctgcagTCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTA
EST: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATG TCTGCAAACGACGGCGCCGGCGACACAAAGATGAGGGCGATCGTCGTCGTAEST: gi|71417415|gb|DR804042.1|DR804042
genomic: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATGgttagtgcgt ... gctgctgcagTCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTA
EST: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATG TCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTAEST: gi|74245993|gb|DT653907.1|DT653907
genomic: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATGgttagtgcgt ... gctgctgcagTCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTA
EST: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATG TCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTAEST: gi|74237215|gb|DT645129.1|DT645129
genomic: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATGgttagtgcgt ... gctgctgcagTCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTA
EST: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATG TCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTAEST: gi|71314199|gb|DR793714.1|DR793714
genomic: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATGgttagtgcgt ... gctgctgcagTCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTA
EST: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATG TCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTAEST: gi|71424538|gb|DR806351.1|DR806351
genomic: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATGgttagtgcgt ... gctgctgcagTCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTA
EST: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATG TCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTAEST: gi|211010835|gb|FL363372.1|FL363372
genomic: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATGgttagtgcgt ... gctgctgcagTCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTA
EST: GCAGAGGCCATCGTCGAGTGTATCCAGTGGTCGAGAAGAGGGAAGAAATG TCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTAEST: gi|74240219|gb|DT648133.1|DT648133
genomic: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATGgttagtgcgt ... gctgctgcagTCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTA
EST: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATG TCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTA
genomic: GCAGAGGCCATCGTCGAGTGTATCCCGTGGTCGAGAAGAGGGAAGAAATGgttagtgcgt ... gctgctgcagTCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTA
tcgtacgtagtaggagagagtgacactgtcaactaacagtatctagctgctgcagTCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTAGAGGAAGGGGAGATGAGCGCGCCGGCGGCGACGCCGAAGCAGGGCAAGT
aactaac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtcagaataggtttcattgatgcatggaccattttctagaagctcgtacgtagtaggagagagtgacactgtcaactaacagtatctagctgctgcagTCTGCGAACGACGGCGCCGGCGACACGAAGATGAGGGCGATCGTCGTCGTAGAGGAAGGGGAGATGAGCGCGCCGGCGGCGACGCCGAAGCAGGGCAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - -tttcatt
- - - - - - - - - - - tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caactaa