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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttatcctgccaacagatggaagtgtgcagcatttttcttctttcatctcttaccactcgtgacagttgctaaatcacgctctgcgctgtgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCACAAG

Basic information

species Zea mays
transcript GRMZM2G044629_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044629_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g52370.2 (Oryza sativa), 3'ss of exon 1
tcttatcctgccaacagatggaagtgtgcagcatttttcttctttcatct---cttaccactcgtgacagttgctaaat------cacgctctgcgctgtgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCACAAG
       |         |  |||   ||||||||  || |  | |||| |   ||||||| |   ||||||  | ||        ||    ||||  | | || | |||||||| || || |||||||| ||||||||||||||||||||||||||||||||||
-------caatagctcaagagaaacctgcagcatgattttattgtcatttgagcttaccattt-cgacagtgaccaatggagctacatatactgcattttttt-ttcagAGCCTGGATCTTTCAAGGATTGATCGGATCATCCGGCGCTCCCTTGGATCACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149081508|gb|EE170644.2|EE170644
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|211249747|gb|FL285802.1|FL285802
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|149015643|gb|EE045441.2|EE045441
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|40337292|gb|CK371362.1|CK371362
EST:     GGGACGATCTCTCGCCCGAGGACCGGGAGCTCCTCGTCCGGGACATCGAG                         AGTCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTT-GATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|149100896|gb|EE186991.2|EE186991
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|149014175|gb|EE043721.2|EE043721
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|148958334|gb|EC904558.2|EC904558
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|211249750|gb|FL285805.1|FL285805
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|71429565|gb|DR810615.1|DR810615
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|148982619|gb|EE028417.2|EE028417
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|211249751|gb|FL285806.1|FL285806
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|211251970|gb|FL285809.1|FL285809
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|149090039|gb|EE179333.2|EE179333
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|78115803|gb|DV534191.1|DV534191
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|148956834|gb|EC902742.2|EC902742
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|91052249|gb|EB162667.1|EB162667
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|149014877|gb|EE044588.2|EE044588
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|148943648|gb|EC888712.2|EC888712
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|211249749|gb|FL285804.1|FL285804
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|71757247|gb|DR955184.1|DR955184
EST:     GGGACGATCTCTCGCCCGAGGACCGGGAGCTCCTCGTCCGGGACATCGAG                         AGTCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|211249748|gb|FL285803.1|FL285803
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGTGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|148990989|gb|EE032426.2|EE032426
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|94477177|gb|EB706135.1|EB706135
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|31354041|gb|CD438398.1|CD438398
EST:     GGGACGATCTCTCGCCCGAGGACCGGGAGCTCCTCGTCCGGGACATCGAG                         AGTCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|211249753|gb|FL285808.1|FL285808
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|76282035|gb|DV021603.1|DV021603
EST:     GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: gi|148966182|gb|EE017130.2|EE017130
EST:     GGGACGATCTCTCGCCCGAGGACCATGAGCTCCTCGTCCGGGACATCGAG                         AGCCTAGACCTCTCAGGGATCGATCGGATCATCCGGCGCTCCCTTGGATCG
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catctcttaccactcgtgacagttgctaaatcacgctctgcgctgtgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCACAAG
                       tgctaaa  putative branch site (score: 2)
                          taaatca  TA-rich tract