1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tcttatcctgccaacagatggaagtgtgcagcatttttcttctttcatctcttaccactcgtgacagttgctaaatcacgctctgcgctgtgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCACAAG
species | Zea mays |
transcript | GRMZM2G044629_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|211249747|gb|FL285802.1|FL285802
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|149015643|gb|EE045441.2|EE045441
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|40337292|gb|CK371362.1|CK371362
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCGGGAGCTCCTCGTCCGGGACATCGAG AGTCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTT-GATCAEST: gi|149100896|gb|EE186991.2|EE186991
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|149014175|gb|EE043721.2|EE043721
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|148958334|gb|EC904558.2|EC904558
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|211249750|gb|FL285805.1|FL285805
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|71429565|gb|DR810615.1|DR810615
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|148982619|gb|EE028417.2|EE028417
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|211249751|gb|FL285806.1|FL285806
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|211251970|gb|FL285809.1|FL285809
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|149090039|gb|EE179333.2|EE179333
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|78115803|gb|DV534191.1|DV534191
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|148956834|gb|EC902742.2|EC902742
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|91052249|gb|EB162667.1|EB162667
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|149014877|gb|EE044588.2|EE044588
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|148943648|gb|EC888712.2|EC888712
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|211249749|gb|FL285804.1|FL285804
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|71757247|gb|DR955184.1|DR955184
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCGGGAGCTCCTCGTCCGGGACATCGAG AGTCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|211249748|gb|FL285803.1|FL285803
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGTGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|148990989|gb|EE032426.2|EE032426
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|94477177|gb|EB706135.1|EB706135
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|31354041|gb|CD438398.1|CD438398
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCGGGAGCTCCTCGTCCGGGACATCGAG AGTCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|211249753|gb|FL285808.1|FL285808
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|76282035|gb|DV021603.1|DV021603
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCAEST: gi|148966182|gb|EE017130.2|EE017130
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
EST: GGGACGATCTCTCGCCCGAGGACCATGAGCTCCTCGTCCGGGACATCGAG AGCCTAGACCTCTCAGGGATCGATCGGATCATCCGGCGCTCCCTTGGATCG
genomic: GGGACGATCTCTCGCCCGAGGACCAGGAGCTCCTCGTCCGGGACATCGAGgtgagctgca ... tgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCA
catctcttaccactcgtgacagttgctaaatcacgctctgcgctgtgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCACAAG
tgctaaa putative branch site (score: 223)
taaatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttatcctgccaacagatggaagtgtgcagcatttttcttctttcatctcttaccactcgtgacagttgctaaatcacgctctgcgctgtgttgtccagAGCCTAGACCTCTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCACAAG
- - -tcctgcc
- - - - - - - - - - - - -gtgcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgctg