1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttccacattttctagctccatatggcttctttgctgtaccgctgctgaaactgtacttaattcacattctgtatttcttgactgttgtggtgattgaagTGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAACAACGAACTGGAAGAGGTGGTCCCAAATGACTCGGACCCTCTTATTGGGA
species | Zea mays |
transcript | GRMZM2G044569_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAG TGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAACEST: gi|71766873|gb|DR964810.1|DR964810
genomic: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAGgtgctgactt ... gtgattgaagTGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAAC
EST: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGT-C-C-- -----GCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAACEST: gi|71764260|gb|DR962197.1|DR962197
genomic: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAGgtgctgactt ... gtgattgaagTGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAAC
EST: CGCCCTCTCGACATAGACCGGCGACGGTAGCTGCATCTTCGAGT-C-C-- -----GCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAACEST: gi|89253176|gb|DY624962.1|DY624962
genomic: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAGgtgctgactt ... gtgattgaagTGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAAC
EST: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAG TGGTTGCAGTGAAAACTATAAGGAAAGAACAGCCTCCTAATGGATAGGAACEST: gi|71449470|gb|DR830520.1|DR830520
genomic: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAGgtgctgactt ... gtgattgaagTGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAAC
EST: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAG TGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAACEST: gi|78075719|gb|DV504153.1|DV504153
genomic: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAGgtgctgactt ... gtgattgaagTGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAAC
EST: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAG TGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAACEST: gi|78085425|gb|DV513818.1|DV513818
genomic: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAGgtgctgactt ... gtgattgaagTGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAAC
EST: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGT-C-C-- -----GCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAACEST: gi|74242907|gb|DT650821.1|DT650821
genomic: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAGgtgctgactt ... gtgattgaagTGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAAC
EST: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAG TGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAACEST: gi|91875640|gb|EB405597.1|EB405597
genomic: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAGgtgctgactt ... gtgattgaagTGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAAC
EST: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGT-C-C-- -----GCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAACEST: gi|149051784|gb|EE155909.2|EE155909
genomic: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAGgtgctgactt ... gtgattgaagTGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAAC
EST: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGT-C-C-- -----GCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAACEST: gi|76287272|gb|DV026840.1|DV026840
genomic: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAGgtgctgactt ... gtgattgaagTGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAAC
EST: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGT-C-C-- -----GCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAACEST: gi|91877670|gb|EB407627.1|EB407627
genomic: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAGgtgctgactt ... gtgattgaagTGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAAC
EST: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAG TGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAACEST: gi|26457371|gb|CA828954.1|CA828954
genomic: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAGgtgctgactt ... gtgattgaagTGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAAC
EST: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGT-C-C-- -----GCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAAC
genomic: CGCCCTCTCGGCATAGACCGGCGACGGTAGCTGCATCTTCGAGTCCGCAGgtgctgactt ... gtgattgaagTGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAAC
ctgaaactgtacttaattcacattctgtatttcttgactgttgtggtgattgaagTGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAACAACGAACTGGAAGAGGTGGTCCCAAATGACTCGGACCCTCTTATTGGGA
tcttgac putative branch site (score: 36)
tacttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttccacattttctagctccatatggcttctttgctgtaccgctgctgaaactgtacttaattcacattctgtatttcttgactgttgtggtgattgaagTGGTTGCAGTGAAAACTAGAAGGGAAGAACAGCCTCCTAATGGATAGGAACAACGAACTGGAAGAGGTGGTCCCAAATGACTCGGACCCTCTTATTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG