1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcgctccccacctcgacccactccgtcttccctgtcccaatgttagcatgctactatgctctggaggctcgttctcagaaaggcgccccgcgcccccgcccgtgtctggcctcgtccgctctcgcagCTGTTCGATGGGCACAACGGGAGCGCCGCCGCGGTGTACGCCAAGGAGCACCTCCTCGGCAACGTGCTCAGCTGCGTCCCGACCGATCTGGCCTGGGACG
species | Zea mays |
transcript | GRMZM2G044382_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTGCGAGCGACGCCCCGGCGCGCCGTCCACCTCCTTCTCCGCCTTCGCC CTGTTCGATGGGCACAACGGGAGCGCCGCCGCGGTGTACGCCAAGGAGCACEST: gi|148971590|gb|EE022306.2|EE022306
genomic: CCTGCGAGCGACGCCCCGGCGCGCCGTCCACCTCCTTCTCCGCCTTCGCCgtaagcgctc ... gctctcgcagCTGTTCGATGGGCACAACGGGAGCGCCGCCGCGGTGTACGCCAAGGAGCAC
EST: CCTGCGAGCGACGCCCCGGCGCGCCGTCCACCTCCTTCTCCGCCTTCGCC CTGTTCGATGGGCACAACGGGAGCGCCGCCGCGGTGTACGCCAAGGAGCACEST: gi|148993132|gb|EE033731.2|EE033731
genomic: CCTGCGAGCGACGCCCCGGCGCGCCGTCCACCTCCTTCTCCGCCTTCGCCgtaagcgctc ... gctctcgcagCTGTTCGATGGGCACAACGGGAGCGCCGCCGCGGTGTACGCCAAGGAGCAC
EST: CCTGCGAGCGACGCCCCGGCGCGCCGTCCACCTCCTTCTCCGCCTTCGCC CTGTTCGATGGGCACAACGGGAGCGCCGCCGCGGTGTACGCCAAGGAGCACEST: gi|148939724|gb|EC884406.2|EC884406
genomic: CCTGCGAGCGACGCCCCGGCGCGCCGTCCACCTCCTTCTCCGCCTTCGCCgtaagcgctc ... gctctcgcagCTGTTCGATGGGCACAACGGGAGCGCCGCCGCGGTGTACGCCAAGGAGCAC
EST: CCTGCGAGCGACGCCCCGGCGCGCCGTCCACCTCCTTCTCCGCCTTCGCC CTGTTCGATGGGCACAACGGGAGCGCCGCCGCGGTGTACGCCAAGGAGCACEST: gi|88747035|gb|DY531176.1|DY531176
genomic: CCTGCGAGCGACGCCCCGGCGCGCCGTCCACCTCCTTCTCCGCCTTCGCCgtaagcgctc ... gctctcgcagCTGTTCGATGGGCACAACGGGAGCGCCGCCGCGGTGTACGCCAAGGAGCAC
EST: CCTGCGAGCGACGCCCCGGCGCGCCGTCCACCTCCTTCTCCGCCTTCGCC CTGTTCGATGGGCACAACGGGAGCGCCGCCGCGGTGTACGCCAAGGAGCACEST: gi|89249221|gb|DY621007.1|DY621007
genomic: CCTGCGAGCGACGCCCCGGCGCGCCGTCCACCTCCTTCTCCGCCTTCGCCgtaagcgctc ... gctctcgcagCTGTTCGATGGGCACAACGGGAGCGCCGCCGCGGTGTACGCCAAGGAGCAC
EST: CCTGCGAGCGACGCCCCGGCGCGCCGTCCACCTCCTTCTCCGCCTTCGCC CTGTTCGATGGGCACAACGGGAGCGCCGCCGCGGTGTACGCCAAGGAGCAC
genomic: CCTGCGAGCGACGCCCCGGCGCGCCGTCCACCTCCTTCTCCGCCTTCGCCgtaagcgctc ... gctctcgcagCTGTTCGATGGGCACAACGGGAGCGCCGCCGCGGTGTACGCCAAGGAGCAC
tctcagaaaggcgccccgcgcccccgcccgtgtctggcctcgtccgctctcgcagCTGTTCGATGGGCACAACGGGAGCGCCGCCGCGGTGTACGCCAAGGAGCACCTCCTCGGCAACGTGCTCAGCTGCGTCCCGACCGATCTGGCCTGGGACG
cctcgtccgctctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgctccccacctcgacccactccgtcttccctgtcccaatgttagcatgctactatgctctggaggctcgttctcagaaaggcgccccgcgcccccgcccgtgtctggcctcgtccgctctcgcagCTGTTCGATGGGCACAACGGGAGCGCCGCCGCGGTGTACGCCAAGGAGCACCTCCTCGGCAACGTGCTCAGCTGCGTCCCGACCGATCTGGCCTGGGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC