1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...actaaaacactagctgcttcagatcagaacttactctgctatctccttatttgtatgacgccggggttaacacctctcttgtgcatcatcatcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTTCCTAACAATGAGGGCACATGAACGAGCTGCCAGTTTGGCTCTTGCCT
species | Zea mays |
transcript | GRMZM2G044348_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|71435689|gb|DR816739.1|DR816739
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|148948442|gb|EC893960.2|EC893960
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|211267468|gb|FK986910.1|FK986910
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|149027788|gb|EE286084.2|EE286084
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|148991460|gb|EE032969.2|EE032969
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCCACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|148948218|gb|EC893734.2|EC893734
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|32921110|gb|CF025922.1|CF025922
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|91875915|gb|EB405872.1|EB405872
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|32920943|gb|CF025755.1|CF025755
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|149097124|gb|EE182936.2|EE182936
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|50330013|gb|CO525139.1|CO525139
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|17930295|gb|BM267255.1|BM267255
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|32808001|gb|CD960235.1|CD960235
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GATCTGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|149001048|gb|EE038297.2|EE038297
genomic: GATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|32797849|gb|CD950085.1|CD950085
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|149100817|gb|EE186911.2|EE186911
genomic: GATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|78088713|gb|DV517106.1|DV517106
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|17930284|gb|BM267244.1|BM267244
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|149110465|gb|EE190430.2|EE190430
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|149067509|gb|EE157716.2|EE157716
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|148976595|gb|EE025942.2|EE025942
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|32920656|gb|CF025468.1|CF025468
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|32921020|gb|CF025832.1|CF025832
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|31360319|gb|CD444676.1|CD444676
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGGGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|32920553|gb|CF025365.1|CF025365
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|32803016|gb|CD955252.1|CD955252
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GATCCCGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|32920675|gb|CF025487.1|CF025487
genomic: GATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|148943973|gb|EC889054.2|EC889054
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|211267467|gb|FK986909.1|FK986909
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|148930101|gb|EC872413.2|EC872413
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|94475590|gb|EB704548.1|EB704548
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTEST: gi|32797933|gb|CD950169.1|CD950169
genomic: GCGGGGACAACAAAAGCTCGAGATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
EST: GATCCTGTGACTGATCTCTTCGTTCCTCG GTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
genomic: GATCCGGTGACTGATCTCTTCGTTCCTCGgtgagtaaac ... atcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGT
cttatttgtatgacgccggggttaacacctctcttgtgcatcatcatcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTTCCTAACAATGAGGGCACATGAACGAGCTGCCAGTTTGGCTCTTGCCT
ggttaac putative branch site (score: 405)
tcatcttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actaaaacactagctgcttcagatcagaacttactctgctatctccttatttgtatgacgccggggttaacacctctcttgtgcatcatcatcttcgcagGTTCACTTTGATATTCCAACAAAGGTCACATTGCTAGACTCCCAGATTGGTTCCTAACAATGAGGGCACATGAACGAGCTGCCAGTTTGGCTCTTGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - -aacacta
- - - - - - gctgctt
- - - - - - - - - - - - - - - - - tctgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcatc