1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgactgacgaaatgacaaggctggcaggcgcgggcacagggcatcggtgggagagctttggttgggattaagactgaacttggttacttgtgctggtgtgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACAGTGGGTTGCGTGCCAAAGGCGAGAAGCCTGACTTGGCACTGGTCGCCT
species | Zea mays |
transcript | GRMZM2G044237_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|71298836|gb|DR785405.1|DR785405
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|149095151|gb|EE180766.2|EE180766
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|148956344|gb|EC902151.2|EC902151
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|148938791|gb|EC883128.2|EC883128
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|78092275|gb|DV520649.1|DV520649
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: CTCCTCCCCGATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|149000193|gb|EE037335.2|EE037335
genomic: CTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|149009106|gb|EE041258.2|EE041258
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCCATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|148932140|gb|EC875563.2|EC875563
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|211328123|gb|FL062397.1|FL062397
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGAGGGCCCTTGGAMACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|211453339|gb|FL002421.1|FL002421
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|28873422|gb|CB329414.1|CB329414
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAG GCGGAAGGCGGCGGCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|149071265|gb|EE159660.2|EE159660
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|71446471|gb|DR827521.1|DR827521
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|74242073|gb|DT649987.1|DT649987
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|148930889|gb|EC873334.2|EC873334
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|148972816|gb|EE023801.2|EE023801
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGCGGTTCAAGGCGGCGGGTATCTACEST: gi|149110343|gb|EE190365.2|EE190365
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|20301290|gb|BQ164233.1|BQ164233
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCTTAGCGCCGATCCTCCTCCCCGAGGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|211328125|gb|FL062399.1|FL062399
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGAGGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACEST: gi|149084216|gb|EE173633.2|EE173633
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
EST: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAG GTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
genomic: GGTTCATCTCCGCAGCGCCGATCCTCCTCCCCGATGGCCCTTGGAAACAGgtgactgacg ... tgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTAC
agctttggttgggattaagactgaacttggttacttgtgctggtgtgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACAGTGGGTTGCGTGCCAAAGGCGAGAAGCCTGACTTGGCACTGGTCGCCT
attaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgactgacgaaatgacaaggctggcaggcgcgggcacagggcatcggtgggagagctttggttgggattaagactgaacttggttacttgtgctggtgtgaaatgcagGTGGAAGGCGGCGTCACTGCCGCGAAGGGGTTCAAGGCGGCGGGTATCTACAGTGGGTTGCGTGCCAAAGGCGAGAAGCCTGACTTGGCACTGGTCGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC