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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

cgagctcaatccccagaggccagagccagctgctcggtgagcgccgcgcccttcgcccccctcaggccctcacgcttcgttgcttgatcgtctgatttctctgacgggtgttttggtttggatctgggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCACATCTCCACCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGT

Basic information

species Zea mays
transcript GRMZM2G044027_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 1
cgagctcaatccccagaggccagagccagctgctcggtgagcgccgcgcccttcgcccccctcaggccctcacgcttcgttgcttgatcgtctga-tttctctgacgggtgttttggtttggatctgggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCACATCTCCACCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGT
                                   |||| | |  |     ||        |  ||       |      |   |||   ||||| | |   ||||||  | | ||    |  | || ||| |||||| |||| ||| |||||||||||||||| |||||||||||| |  || | |   | ||||||||||||||||||| || ||||| ||||| ||||||||||
-----------------------------------ggtg-gtgttggttttttttttttttttgggtgggggggggggaat-tgtgacgatctgagtgttggtgacggtggatctgtggcgtttttgtgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAGCACACCACCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgatcgtctgatttctctgacgggtgttttggtttggatctgggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCACATCTCCACCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGT
                 ctctgac  putative branch site (score: 3)