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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgccgcgcccttcgcccccctcaggccctcacgcttcgttgcttgatcgtctgatttctctgacgggtgttttggtttggatctgggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCACATCTCCACCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGT

Basic information

species Zea mays
transcript GRMZM2G044027_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044027_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 1
gtgagcgccgcgcccttcgcccccctcaggccctcacgcttcgttgcttgatcgtctga-tttctctgacgggtgttttggtttggatctgggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCACATCTCCACCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGT
|   | |  |     ||        |  ||       |      |   |||   ||||| | |   ||||||  | | ||    |  | || ||| |||||| |||| ||| |||||||||||||||| |||||||||||| |  || | |   | ||||||||||||||||||| || ||||| ||||| ||||||||||
ggtggtgttggttttttttttttttttgggtgggggggggggaat-tgtgacgatctgagtgttggtgacggtggatctgtggcgtttttgtgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAGCACACCACCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211425107|gb|FK999878.1|FK999878
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|149089880|gb|EE179165.2|EE179165
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|148944203|gb|EC889294.2|EC889294
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|148961007|gb|EE011707.2|EE011707
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|40334152|gb|CK368222.1|CK368222
EST:     AATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: AATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|32831707|gb|CD971385.1|CD971385
EST:     AGCCCACGCAAG-CGAGCTCAAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: AG-CCACGCAAGCCGAGCTC-AATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|22473192|gb|BU037672.1|BU037672
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|32830323|gb|CD970001.1|CD970001
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGG-GCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|89756809|gb|DY686692.1|DY686692
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|148970766|gb|EE021510.2|EE021510
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|211528265|gb|FL432934.1|FL432934
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGG
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGG
EST: gi|6020952|gb|AW065880.1|AW065880
EST:     GGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: GGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|67016223|gb|CO444972.1|CO444972
EST:     CGAGCCACTCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|21987903|gb|BQ779431.1|BQ779431
EST:     CGAG-CACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|148930565|gb|EE285203.2|EE285203
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|26558105|gb|CA830340.1|CA830340
EST:     CACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|71442898|gb|DR823948.1|DR823948
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|211425100|gb|FK999871.1|FK999871
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|149107237|gb|EE189120.2|EE189120
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|211425097|gb|FK999868.1|FK999868
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|15632416|gb|BI679509.1|BI679509
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|149081449|gb|EE170575.2|EE170575
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|211427693|gb|FK999880.1|FK999880
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|40337515|gb|CK371585.1|CK371585
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|148951041|gb|EC896695.2|EC896695
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|149066780|gb|EE286922.2|EE286922
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|148960534|gb|EE011139.2|EE011139
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|149089846|gb|EE179125.2|EE179125
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|149097834|gb|EE183762.2|EE183762
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|211425101|gb|FK999872.1|FK999872
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|149097829|gb|EE183756.2|EE183756
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|148945878|gb|EC891170.2|EC891170
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|211425106|gb|FK999877.1|FK999877
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGG
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGG
EST: gi|148956701|gb|EC902571.2|EC902571
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
EST: gi|211427695|gb|FK999882.1|FK999882
EST:     CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCG                         GCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC
genomic: CGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 192

CCTCGTCCGCCCCAGTCTAGTCCGATTCAAACCCGCCCGTTCCCCGTGTCCGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCACATCTCCACCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 204

CCTCGTCCGCCCCAGTCTAGTCCGATTCAAACCCGCCCGTTCCCCGTGTCCGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCACATCTCCACCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 128

CCTCGTCCGCCCCAGTCTAGTCCGATTCAAACCCGCCCGTTCCCCGTGTCCGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCACATCTCCACCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 631

CCTCGTCCGCCCCAGTCTAGTCCGATTCAAACCCGCCCGTTCCCCGTGTCCGAGCCACGCAAGCCGAGCTCAATCCCCAGAGGCCAGAGCCAGCTGCTCGgtgagcgccg ... ggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCACATCTCCACCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgatcgtctgatttctctgacgggtgttttggtttggatctgggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCACATCTCCACCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGT
                 ctctgac  putative branch site (score: 631)