1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gtagttcaagtctccatccacggcttgctcttgcatgtgtgcatgttatgcaaatttttaattttcttatgaagtaataagggatttcttctggttccagGAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAAGCTTAAGTTAGAAATTGTAGTCGAG
species | Zea mays |
transcript | GRMZM2G044011_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACG GAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAAEST: gi|19351008|gb|BM895540.1|BM895540
genomic: GCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACGgtgagtgcat ... ctggttccagGAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAA
EST: GCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACG GAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAAEST: gi|19351610|gb|BM896142.1|BM896142
genomic: GCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACGgtgagtgcat ... ctggttccagGAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAA
EST: GCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACG GAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAAEST: gi|22491504|gb|BU051427.1|BU051427
genomic: GCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACGgtgagtgcat ... ctggttccagGAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAA
EST: GCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACG GAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAA
genomic: GCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACGgtgagtgcat ... ctggttccagGAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAA
ttatgcaaatttttaattttcttatgaagtaataagggatttcttctggttccagGAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAAGCTTAAGTTAGAAATTGTAGTCGAG
ttttaat putative branch site (score: 75)
tttcttctggttcc putative PPT
aaatttttaattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagttcaagtctccatccacggcttgctcttgcatgtgtgcatgttatgcaaatttttaattttcttatgaagtaataagggatttcttctggttccagGAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAAGCTTAAGTTAGAAATTGTAGTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - catccac
- - - - - - - - - - -ggcttgc
- - - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - tatgcaa