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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatcgtgctaggctaaaatggacagtggctacaagttcacatgttctgacgatagcttcactagtcgggcatgctgattgagatcatgacttgttttagGGGCCAGGCCGAGAAGGAATTCAAGGTGGAGGTTGAAGCCATCGGCAAAGTGAGGCACAAGCACCTTGTCGGTCTCATCGGGTACTGCGCAGAAGGTCCA

Basic information

species Zea mays
transcript GRMZM2G043470_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043470_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g12680.2 (Oryza sativa), 3'ss of exon 1
atatcgtgctaggctaaaatggacagtggctacaagttcacatgttctgacgatagcttc-------actagtcgggcatgctgat-tgagatca---tgacttgttttagGGGCCAGGCCGAGAAGGAATTCAAGGTGGAGGTTGAAGCCATCGGCAAAGTGAGGCACAAGCACCTTGTCGGTCTCATCGGGTACTGCGCAGAAGGTCCA
          | | | |  || |   | | |  |   |  || || | ||  ||    ||       | |||    || ||||||| ||  || |   || | | ||| ||||| || || ||||||||||||||||||||||| || || |||||||| |||||||||||||| || || |||||| | || |||||||| ||||| || 
---------gaagttga--tgaattataggtttattatatcacgtacggataatcatgtctgaagaaattagggatgcctgctgatctggaattaaactgtcctttttcagGGGTCAAGCAGAGAAGGAATTCAAGGTGGAGGTAGAGGCGATCGGCAAGGTGAGGCACAAGCATCTGGTTGGTCTCGTTGGTTACTGCGCGGAAGGGCCC

upper sequence: GRMZM2G043470_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA06G01490.1 (Glycine max), 3'ss of exon 1
atatcgtgctaggctaaaatggacagtggctacaagttcacatgttctgacgatagct-tcactagtcgggcatgctgattgagatcatgacttgttttagGGGCCAGGCCGAGAAGGAATTCAAGGTGGAGGTTGAAGCCATCGGCAAAGTGAGGCACAAGCACCTTGTCGGTCTCATCGGGTACTGCGCAGAAGGTCCA
 | || | |  |  | ||| | ||| |   |  |  |   | |   ||  |  | ||  |  ||  | |    |  ||  |   ||       | | | ||||||||||| ||||| || || || ||||||||||||||||| || |||||||  || ||| |  | || ||  |  | || || |||||||||||| | 
-tctctttcctgaattaaaggaacatttttttaatatattctttcccttccccttgccatggcttattgaaattcatgtgtattattgaattgtatctaagGGGCCAGGCAGAGAAAGAGTTTAAAGTGGAGGTTGAAGCCATTGGAAAAGTGAAACATAAGAATTTGGTGGGGTTAGTTGGATATTGCGCAGAAGGTGCT

upper sequence: GRMZM2G043470_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA04G01440.1 (Glycine max), 3'ss of exon 1
atatcgtgctaggctaaaatggacagtggctacaagttcacatgttctgacgatagcttcactagtcgggcatgctgattgagatcatgacttgttttagGGGCCAGGCCGAGAAGGAATTCAAGGTGGAGGTTGAAGCCATCGGCAAAGTGAGGCACAAGCACCTTGTCGGTCTCATCGGGTACTGCGCAGAAGGTCCA
|| || | |  |    ||  | ||| |   |  |  |   | |  |||  |     | |  ||  | |    |  ||  |    |       |   | ||||| ||||| ||||| || || |||||||||||||||||||| || |||||||  || ||| |  | || ||  |  | || || |||||||||||| | 
atctctttcctgaaataacggaacatttctttgatataatctttctctccccccgccatggcttattgaaattcatgtgtattgtttaattgtaactaagGGGTCAGGCAGAGAAAGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTGAAACATAAGAATTTGGTGGGGTTAGTTGGATATTGCGCAGAAGGTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgacgatagcttcactagtcgggcatgctgattgagatcatgacttgttttagGGGCCAGGCCGAGAAGGAATTCAAGGTGGAGGTTGAAGCCATCGGCAAAGTGAGGCACAAGCACCTTGTCGGTCTCATCGGGTACTGCGCAGAAGGTCCA
                                             cttgtttt  CT-rich tract
                                              ttgtttta  TA-rich tract