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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtgctctcccgccaccgggctccccgccctcgcttcgctctcaccgtgacccgtttctctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGACCTACTCCGCCGCGGCCAAGGAG

Basic information

species Zea mays
transcript GRMZM2G043198_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211099620|gb|FL375433.1|FL375433
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|149112130|gb|EE191255.2|EE191255
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211273080|gb|FL371948.1|FL371948
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|71432759|gb|DR813809.1|DR813809
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|71310907|gb|DR791756.1|DR791756
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211063939|gb|FL426137.1|FL426137
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211017664|gb|FL418154.1|FL418154
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGGCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|76282096|gb|DV021664.1|DV021664
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211444057|gb|FL415432.1|FL415432
EST:     GCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: GCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211423792|gb|FL402788.1|FL402788
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211395332|gb|FL395257.1|FL395257
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211491514|gb|FL426447.1|FL426447
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCTGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|149008831|gb|EE041037.2|EE041037
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|22473034|gb|BU037529.1|BU037529
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCTGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211054277|gb|FL399886.1|FL399886
EST:     TCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|148953725|gb|EC899090.2|EC899090
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211016844|gb|FL388973.1|FL388973
EST:     GTCGCGCGGAGGCGGCTCGGATCTGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: GTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|37426139|gb|CF650819.1|CF650819
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211003333|gb|FL404181.1|FL404181
EST:     DNGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCA-G
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|50323851|gb|CO518977.1|CO518977
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|50338477|gb|CO533603.1|CO533603
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|148962973|gb|EE013917.2|EE013917
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211431560|gb|FL401076.1|FL401076
EST:     GTCGCGCGGAGGCGGCTCGGATCTGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: GTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|148957039|gb|EC902998.2|EC902998
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|149083342|gb|EE172638.2|EE172638
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211530195|gb|FL395784.1|FL395784
EST:     TMGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|14997073|gb|BI319153.1|BI319153
EST:     CGCGTACGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGATCCCGCCAGG
genomic: CGCGT-CGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|78112129|gb|DV530525.1|DV530525
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|148986266|gb|EE029999.2|EE029999
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|18964295|gb|BM660923.1|BM660923
EST:     AGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: AGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|38687965|gb|CK144996.1|CK144996
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|149083993|gb|EE173384.2|EE173384
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|149008355|gb|EE040508.2|EE040508
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211499368|gb|FL394923.1|FL394923
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCTGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|149080209|gb|EE169232.2|EE169232
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|78092119|gb|DV520493.1|DV520493
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|71431246|gb|DR812296.1|DR812296
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|149060161|gb|EE157129.2|EE157129
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|8367328|gb|BE050273.1|BE050273
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCTGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|148995150|gb|EE034430.2|EE034430
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|71316612|gb|DR794981.1|DR794981
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|32804720|gb|CD956956.1|CD956956
EST:     GATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: GATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211056917|gb|FL385087.1|FL385087
EST:     GTCGCGCGGAGGCGGCTCGGATCTGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: GTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|31354921|gb|CD439278.1|CD439278
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCTGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|31357689|gb|CD442046.1|CD442046
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCTGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211503999|gb|FL380203.1|FL380203
EST:     GTCGCGCGGAGGCGGCTCGGATCTGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: GTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211479962|gb|FL426376.1|FL426376
EST:     GTCGCGCGGAGGCGGCTCGGATCTGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: GTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|148945013|gb|EC890191.2|EC890191
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|148933048|gb|EE285947.2|EE285947
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|148936258|gb|EC880337.2|EC880337
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|50338853|gb|CO533979.1|CO533979
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|50322511|gb|CO517637.1|CO517637
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|71442750|gb|DR823800.1|DR823800
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211084499|gb|FL378037.1|FL378037
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|93017393|gb|EB642913.1|EB642913
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|149097247|gb|EE183065.2|EE183065
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|93281968|gb|EB674232.1|EB674232
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCCCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|213187914|gb|FM182663.1|FM182663
EST:     TCGCGNNNGAGAT-CTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211279267|gb|FL423597.1|FL423597
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGGCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: gi|211311674|gb|FL419261.1|FL419261
EST:     TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC                         GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accgggctccccgccctcgcttcgctctcaccgtgacccgtttctctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGACCTACTCCGCCGCGGCCAAGGAG
                        ctctcac  putative branch site (score: 3)
                                    cccgtttctctccccg  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagtgctctcccgccaccgggctccccgccctcgcttcgctctcaccgtgacccgtttctctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGACCTACTCCGCCGCGGCCAAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG