1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtcagtgctctcccgccaccgggctccccgccctcgcttcgctctcaccgtgacccgtttctctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGACCTACTCCGCCGCGGCCAAGGAG
species | Zea mays |
transcript | GRMZM2G043198_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211273080|gb|FL371948.1|FL371948
genomic: GCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211491514|gb|FL426447.1|FL426447
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCTGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211003333|gb|FL404181.1|FL404181
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: DNGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCA-GEST: gi|148930818|gb|EC873192.2|EC873192
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211084499|gb|FL378037.1|FL378037
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|32799489|gb|CD951725.1|CD951725
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: GATCCAGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|148953725|gb|EC899090.2|EC899090
genomic: GATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|32804720|gb|CD956956.1|CD956956
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: GATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|37426139|gb|CF650819.1|CF650819
genomic: GATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|38687965|gb|CK144996.1|CK144996
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|14997073|gb|BI319153.1|BI319153
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: CGCGTACGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGATCCCGCCAGGEST: gi|93281968|gb|EB674232.1|EB674232
genomic: CGCGT-CGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCCCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211431560|gb|FL401076.1|FL401076
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: GTCGCGCGGAGGCGGCTCGGATCTGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211311674|gb|FL419261.1|FL419261
genomic: GTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211503999|gb|FL380203.1|FL380203
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: GTCGCGCGGAGGCGGCTCGGATCTGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211056917|gb|FL385087.1|FL385087
genomic: GTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: GTCGCGCGGAGGCGGCTCGGATCTGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211395332|gb|FL395257.1|FL395257
genomic: GTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|8367328|gb|BE050273.1|BE050273
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCTGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211017664|gb|FL418154.1|FL418154
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGGCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211499368|gb|FL394923.1|FL394923
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCTGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211423792|gb|FL402788.1|FL402788
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211063939|gb|FL426137.1|FL426137
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211099620|gb|FL375433.1|FL375433
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211542664|gb|FL412592.1|FL412592
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211054277|gb|FL399886.1|FL399886
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211479962|gb|FL426376.1|FL426376
genomic: TCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: GTCGCGCGGAGGCGGCTCGGATCTGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|31357689|gb|CD442046.1|CD442046
genomic: GTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCTGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211530195|gb|FL395784.1|FL395784
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TMGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211016844|gb|FL388973.1|FL388973
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: GTCGCGCGGAGGCGGCTCGGATCTGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGEST: gi|211279267|gb|FL423597.1|FL423597
genomic: GTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
EST: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGC GTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGGCAGG
genomic: TCGCGTCGGAGATGCTGGGCGTCGCGCGGAGGCGGCTCGGATCCGGATGCgtcagtgctc ... ctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGG
accgggctccccgccctcgcttcgctctcaccgtgacccgtttctctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGACCTACTCCGCCGCGGCCAAGGAG
ctctcac putative branch site (score: 3)
cccgtttctctccccg putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgctctcccgccaccgggctccccgccctcgcttcgctctcaccgtgacccgtttctctccccgcagGTGCTCGCCCAGCTGGCGCAGGCCCTCCGCCCCGCCGCCGCTCCCGCCAGGACCTACTCCGCCGCGGCCAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG