1 5' 3' | 2 5' 3' | 3 5' 3' |
gttagccgtttttttcaatcaatccgccatctttaatacttgcacttcctgtggtttaagtctaagggctagtttaggaacctcaatttcccatttccaaaggatttctttccatggaaaaatagaaatcttttagaaactaataacagactctttcctgacgacaacagAGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCCACTGTGAGCTACAGAGATCGGCTGAAGATCATGGCCGGCCTGGTCAACC
species | Zea mays |
transcript | GRMZM2G043141_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGAATGCTACGACAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATG AGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCCEST: gi|211375414|gb|FL332337.1|FL332337
genomic: CCGAATGCTACGACAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATGgttagccgtt ... acgacaacagAGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCC
EST: CCGAATGCTACGACAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATG AGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCCEST: gi|211327218|gb|FL357902.1|FL357902
genomic: CCGAATGCTACGACAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATGgttagccgtt ... acgacaacagAGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCC
EST: CCGAATGCTACGACAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATG AGGTTTTTCGAGGACGAAACCGAGAAGGTTAAAGGGTTCACGTCAGAATCCEST: gi|6952640|gb|AW424708.1|AW424708
genomic: CCGAATGCTACGACAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATGgttagccgtt ... acgacaacagAGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCC
EST: CCGAATGCTACGATAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATG AGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCC
genomic: CCGAATGCTACGACAAGGAGGTTTCCGAACATTTCAAGGAGTCTATGATGgttagccgtt ... acgacaacagAGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCC
ggaaaaatagaaatcttttagaaactaataacagactctttcctgacgacaacagAGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCCACTGTGAGCTACAGAGATCGGCTGAAGATCATGGCCGGCCTGGTCAACC
aaatcttttagaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagccgtttttttcaatcaatccgccatctttaatacttgcacttcctgtggtttaagtctaagggctagtttaggaacctcaatttcccatttccaaaggatttctttccatggaaaaatagaaatcttttagaaactaataacagactctttcctgacgacaacagAGGTTTTTCGAGGACGAAACCGAGAAGGTGAAAGGGTTCACGTCAGAATCCACTGTGAGCTACAGAGATCGGCTGAAGATCATGGCCGGCCTGGTCAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA