1 5' 3' | 2 5' 3' | 3 5' 3' |
...tggttagtagtctccccgcaggctcgtggcgtagcagcagattcgttgggaggtggattagcagagctagggttttgtagtcacagtacgttcctcctagATCGAGCTCGCTTATTATTGGTATAGCGTCTGCCGTGCGGTCCAATGATCAAGGCGAACCCGGACAGCATGCTGCCGCCGGGATTCCGGTTCCACCCGAC
species | Zea mays |
transcript | GRMZM2G042494_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ttgggaggtggattagcagagctagggttttgtagtcacagtacgttcctcctagATCGAGCTCGCTTATTATTGGTATAGCGTCTGCCGTGCGGTCCAATGATCAAGGCGAACCCGGACAGCATGCTGCCGCCGGGATTCCGGTTCCACCCGAC
cgttcctcct CT-rich tract
ttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggttagtagtctccccgcaggctcgtggcgtagcagcagattcgttgggaggtggattagcagagctagggttttgtagtcacagtacgttcctcctagATCGAGCTCGCTTATTATTGGTATAGCGTCTGCCGTGCGGTCCAATGATCAAGGCGAACCCGGACAGCATGCTGCCGCCGGGATTCCGGTTCCACCCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - -ccccgca
- - - - - - - - - - -gctcgtg
- - - - - - - - - - - - - - - - -gcagcag