1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tagcttcatgtcaagttgtaccatttttcttttgccaaggaggtctcctgacttaactgcaaggctaatttgatgtgattgagtgaatccttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGGTGGACGTTGTGACCGAGGATGACAGCGTCGATGGTGACGTTACCGACG
species | Zea mays |
transcript | GRMZM2G042080_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|76932372|gb|DV173030.1|DV173030
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|211287064|gb|FL337506.1|FL337506
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|101383237|gb|EB813674.1|EB813674
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGCGAAGGGGAACGAGGEST: gi|211517502|gb|FL351631.1|FL351631
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGG-GA-GGGGA-CGAGG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|76287059|gb|DV026627.1|DV026627
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATACTTCGTTGTGCCAATAAGEST: gi|211260647|gb|FL352281.1|FL352281
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|71421895|gb|DR805584.1|DR805584
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|148959395|gb|EC905430.2|EC905430
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|37426350|gb|CF650926.1|CF650926
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|89252849|gb|DY624635.1|DY624635
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|33467070|gb|CF244119.1|CF244119
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|148935525|gb|EC879566.2|EC879566
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|149075255|gb|EE163758.2|EE163758
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|211377469|gb|FL308234.1|FL308234
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCYTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|148993468|gb|EE033787.2|EE033787
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|50329231|gb|CO524357.1|CO524357
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|211276077|gb|FL337059.1|FL337059
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|211241657|gb|FL328636.1|FL328636
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|5398723|gb|AI812188.1|AI812188
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|211290848|gb|FL314519.1|FL314519
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGEST: gi|50331822|gb|CO526948.1|CO526948
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
EST: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAG GGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
genomic: CCCGGCGGTTTGGCCCCCGACTCGTCCTCCTGCGGAGAGGAGGCGCCGAGgtgagagttt ... ttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAG
tcctgacttaactgcaaggctaatttgatgtgattgagtgaatccttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGGTGGACGTTGTGACCGAGGATGACAGCGTCGATGGTGACGTTACCGACG
tcctttt CT-rich tract
taatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagcttcatgtcaagttgtaccatttttcttttgccaaggaggtctcctgacttaactgcaaggctaatttgatgtgattgagtgaatccttttgatcagGGGGAGGGGACGAGGACACGGAATTGCCCAATATTTCGTTGTGCCAATAAGGTGGACGTTGTGACCGAGGATGACAGCGTCGATGGTGACGTTACCGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG