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gtatgcccgacgcttatcttaccttcctgctgcgcaaaccctaagtaataatttgtattgcatctgacacaattagtgtaaatatggtattagtaacttcatttttttgttaaaaaatatcggctgcattgcttgctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTTTTGCTAG
species | Zea mays |
transcript | GRMZM2G042027_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAG TCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTTEST: gi|211371111|gb|FL037583.1|FL037583
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAG TCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTTEST: gi|71436673|gb|DR817723.1|DR817723
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCA-C-- -CAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTTEST: gi|71302083|gb|DR787129.1|DR787129
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCA-C-- -CAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTTEST: gi|211373758|gb|FL037586.1|FL037586
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAG TCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTTEST: gi|211371112|gb|FL037584.1|FL037584
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCA-C-- -CAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTTEST: gi|50325364|gb|CO520490.1|CO520490
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAG TCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTTEST: gi|60342707|gb|DN209680.1|DN209680
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAG TCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTTEST: gi|91054196|gb|EB164614.1|EB164614
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCA-C-- -CAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTTEST: gi|78083391|gb|DV511784.1|DV511784
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCA-C-- -CAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
ttagtaacttcatttttttgttaaaaaatatcggctgcattgcttgctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTTTTGCTAG
tagtaac putative branch site (score: 7)
aacttcatttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcccgacgcttatcttaccttcctgctgcgcaaaccctaagtaataatttgtattgcatctgacacaattagtgtaaatatggtattagtaacttcatttttttgttaaaaaatatcggctgcattgcttgctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTTTTGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT