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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgtatgtacagtcaaaccagtcattctttcatgatttcatcagctaagttgtttgtcacttatagaatctttctctactttccttttggggttttctagGTTTCAGCTCATACGTCAGCGGGAAAGACAGTAGTCGCGTTGTATGCAATAGCGATGTCTTTGCGCAACCAACAGCGGGTCATTTATACATCTCCAATCA

Basic information

species Zea mays
transcript GRMZM2G040995_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G040995_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g18140.1 (Oryza sativa), 3'ss of exon 1
ctgtatgtacagtcaaaccagtcattctttcatg--atttcatcagctaagttgtttgtcacttatag--aatctttctctactttccttt---tggggttttctagGTTTCAGCTCATACGTCAGCGGGAAAGACAGTAGTCGCGTTGTATGCAATAGCGATGTCTTTGCGCAACCAACAGCGGGTCATTTATACATCTCCAATCA
         |  |  |  || ||  |||  ||||  | || |     |   | |||| ||| | |      | |  | | ||||||  |||   ||||  |||| |||| |||||||| || ||||| ||||||||||| || || |||||||||||||| ||||||||||| || || || || ||||| ||||||||||||||||
------aggccatttattca-tctgtctggcatgccacttaagttattttatggtttttcaatcagcattgacccctttatacttttgttttcatgggagtttccagGTCTCAGCTCACACATCAGCTGGAAAGACAGTGGTTGCATTGTATGCAATAGCAATGTCTTTGCGTAATCAGCAACGTGTCATCTATACATCTCCAATCA

upper sequence: GRMZM2G040995_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv06s0009g01750.t01 (Vitis vinifera), 3'ss of exon 1
ctgtatgtacagtcaaaccagtcattctttcatgatttcatcagctaagttgtttgtcacttatagaatctttctctactttccttttggggttttc-tagGTTTCAGCTCATACGTCAGCGGGAAAGACAGTAGTCGCGTTGTATGCAATAGCGATGTCTTTGCGCAACCAACAGCGGGTCATTTATACATCTCCAATCA
     |    | |  |     | ||  ||||   ||     |  || | |     |||    | |   |||   |||    || |||     || |  ||||| ||||||||||| |||||||||||||| || || ||||| ||||| || || ||||| ||||  ||| | || || || || || || || || ||||
taacctacctactttattttattatgttttctcaatcagtgcctcttattctgcagtc-tgcacatgttctacatctctcatcatttccattttctgatagGTATCAGCTCATACATCAGCGGGAAAGACTGTTGTAGCGTTATATGCTATTGCCATGTCATTGCAAAACAATCAACGAGTAATATACACTTCGCCTATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagttgtttgtcacttatagaatctttctctactttccttttggggttttctagGTTTCAGCTCATACGTCAGCGGGAAAGACAGTAGTCGCGTTGTATGCAATAGCGATGTCTTTGCGCAACCAACAGCGGGTCATTTATACATCTCCAATCA
                                               ttttct  CT-rich tract
               ttatagaat  TA-rich tract