Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcagcttggcaacaactcatcagtcgcatgccattttagaccttattgagtctaaatggtctgatttagttgcagagatgccactaaagatatgctatcctgctcttgaaaaccagGAATGGAAAATCATCACTGGGAGTGACCCTAAAAACAC

Basic information

species Zea mays
transcript GRMZM2G040843_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78108809|gb|DV527226.1|DV527226
EST:     CAGCTCATATGGACTTCCGATTCTTTTCACTGGGAAATTTATGGTCAATA                         GAATGGAAAATCATCACTGGGAGTGACCCTAAAAACAC
genomic: CAGCTCATATGGACTTCCGATTCTTTTCACTGGGAAATTTATGGTCAATAgtaagcagct ... tgaaaaccagGAATGGAAAATCATCACTGGGAGTGACCCTAAAAACAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatttagttgcagagatgccactaaagatatgctatcctgctcttgaaaaccagGAATGGAAAATCATCACTGGGAGTGACCCTAAAAACAC
                    cactaaa  putative branch site (score: 2)
                                    tcctgctctt  putative PPT
                       taaagatat  TA-rich tract