1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgctcctcgctggcgccgcagcgtcttcttctcagactcatgcggagccatggaattgagatgctgaatggattttatgcgcgcgcgcagGTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCGCGTTTCGTGCTGTGGGAGGGGAAGCTGAGGCCCGTGCCATCCAAGCCCG
species | Zea mays |
transcript | GRMZM2G039396_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGAGGGTCCCAACAGCTTCCAGCCCTCCGACCCCGTTCTCACCATGGCC GTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCGEST: gi|149071120|gb|EE159520.2|EE159520
genomic: AGGAGGGTCCCAACAGCTTCCAGCCCTCCGACCCCGTTCTCACCATGGCCgtacgctcct ... gcgcgcgcagGTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCG
EST: AGGAGGGTCCCAACAGCTTCCAGCCCTCCGACCCCGTTCTCACCATGGCC GTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCGEST: gi|78079002|gb|DV507414.1|DV507414
genomic: AGGAGGGTCCCAACAGCTTCCAGCCCTCCGACCCCGTTCTCACCATGGCCgtacgctcct ... gcgcgcgcagGTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCG
EST: AGGAGGGTCCCAACAGCTTCCAGCCCTCCGACCCCGTTCTCACCATGGCC GTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCGEST: gi|211265727|gb|FL016769.1|FL016769
genomic: AGGAGGGTCCCAACAGCTTCCAGCCCTCCGACCCCGTTCTCACCATGGCCgtacgctcct ... gcgcgcgcagGTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCG
EST: AGGAGGGTCCCAACAGCTTCCAGCCCTCCGACCCCGTTCTCACCATGGCC GTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCGEST: gi|211265725|gb|FL016767.1|FL016767
genomic: AGGAGGGTCCCAACAGCTTCCAGCCCTCCGACCCCGTTCTCACCATGGCCgtacgctcct ... gcgcgcgcagGTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCG
EST: AGGAGGGTCCCAACAGCTTCCAGCCCTCCGACCCCGTTCTCACCATGGCC GTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCGEST: gi|211265723|gb|FL016765.1|FL016765
genomic: AGGAGGGTCCCAACAGCTTCCAGCCCTCCGACCCCGTTCTCACCATGGCCgtacgctcct ... gcgcgcgcagGTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCG
EST: AGGAGGGTCCCAACAGCTTCCAGCCCTCCGACCCCGTTCTCACCATGGCC GTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCGEST: gi|78087541|gb|DV515934.1|DV515934
genomic: AGGAGGGTCCCAACAGCTTCCAGCCCTCCGACCCCGTTCTCACCATGGCCgtacgctcct ... gcgcgcgcagGTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCG
EST: AGGAGGGTCCCAACAGCTTCCAGCCCTCCGACCCCGTTCTCACCATGGCC GTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCGEST: gi|211265728|gb|FL016770.1|FL016770
genomic: AGGAGGGTCCCAACAGCTTCCAGCCCTCCGACCCCGTTCTCACCATGGCCgtacgctcct ... gcgcgcgcagGTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCG
EST: AGGAGGGTCCCAACAGCTTCCAGCCCTCCGACCCCGTTCTCACCATGGCC GTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCG
genomic: AGGAGGGTCCCAACAGCTTCCAGCCCTCCGACCCCGTTCTCACCATGGCCgtacgctcct ... gcgcgcgcagGTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCG
actcatgcggagccatggaattgagatgctgaatggattttatgcgcgcgcgcagGTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCGCGTTTCGTGCTGTGGGAGGGGAAGCTGAGGCCCGTGCCATCCAAGCCCG
attttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgctcctcgctggcgccgcagcgtcttcttctcagactcatgcggagccatggaattgagatgctgaatggattttatgcgcgcgcgcagGTGGACAGCGGACTGAAGGATGACTTGGTTTTTGGGGACCCAAACGCGCCGCGTTTCGTGCTGTGGGAGGGGAAGCTGAGGCCCGTGCCATCCAAGCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA