1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcctttgacattctaaaacttctatagaaatctccgttcaacttcaaacagtgtcaaacataaatggttgctaattaatggtgttcttgctttctttcagGTGCTACTCCCAAACTGTGTGTTCCTTCTCCGGGGAAACCACGAATCCAAGTACTGCACGTCAAGTATATGGTTTCGAGAAGGAGGTAATGACTAAATAC
species | Zea mays |
transcript | GRMZM2G039359_T07 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCGCGGCGCCTGGGGCCTCGAGACCTTCCTCCTGCTCCTCGCCTGGAAG GTGCTACTCCCAAACTGTGTGTTCCTTCTCCGGGGAAACCACGAATCCAAGEST: gi|31360332|gb|CD444689.1|CD444689
genomic: ACCGCGGCGCCTGGGGCCTCGAGACCTTCCTCCTGCTCCTCGCCTGGAAGgtgaattctg ... tttctttcagGTGCTACTCCCAAACTGTGTGTTCCTTCTCCGGGGAAACCACGAATCCAAG
EST: ACCGCGGCGCCTGGGGCCTCGAGACCTTCCTCCTGCTCCTCGCCTGGAAG GTGCTACTCCCAAACTGTGTGTTCCTTCTGCGGGGAAACCACGAATCCAAGEST: gi|149108769|gb|EE292957.2|EE292957
genomic: ACCGCGGCGCCTGGGGCCTCGAGACCTTCCTCCTGCTCCTCGCCTGGAAGgtgaattctg ... tttctttcagGTGCTACTCCCAAACTGTGTGTTCCTTCTCCGGGGAAACCACGAATCCAAG
EST: ACCGCGGCGCCTGGGGCCTCGAGACCTTCCTCCTGCTCCTCGCCTGGAAG GTGCTACTCCCAAACTGTGTGTTCCTTCTCCGGGGAAACCACGAATCCAAG
genomic: ACCGCGGCGCCTGGGGCCTCGAGACCTTCCTCCTGCTCCTCGCCTGGAAGgtgaattctg ... tttctttcagGTGCTACTCCCAAACTGTGTGTTCCTTCTCCGGGGAAACCACGAATCCAAG
aaacagtgtcaaacataaatggttgctaattaatggtgttcttgctttctttcagGTGCTACTCCCAAACTGTGTGTTCCTTCTCCGGGGAAACCACGAATCCAAGTACTGCACGTCAAGTATATGGTTTCGAGAAGGAGGTAATGACTAAATAC
tgttcttgctttcttt CT-rich tract
aaacataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctttgacattctaaaacttctatagaaatctccgttcaacttcaaacagtgtcaaacataaatggttgctaattaatggtgttcttgctttctttcagGTGCTACTCCCAAACTGTGTGTTCCTTCTCCGGGGAAACCACGAATCCAAGTACTGCACGTCAAGTATATGGTTTCGAGAAGGAGGTAATGACTAAATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG