1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcggtttattgatctgtctgttcatttcgtgctttgattttcttcattgcagtggtatctagtgttttgttttggagcgaggatttatttgtgtgcggtttttgctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAG
species | Zea mays |
transcript | GRMZM2G039325_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCYTGGGGAGGC-CAGACGGAGATACGCGCACTG-GCTEST: gi|211234001|gb|FL170994.1|FL170994
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTEST: gi|211233996|gb|FL170989.1|FL170989
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTEST: gi|149084677|gb|EE174161.2|EE174161
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTEST: gi|211234006|gb|FL170999.1|FL170999
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCCTGGGGAGGCEST: gi|211233998|gb|FL170991.1|FL170991
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGC
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTEST: gi|211231947|gb|FL170987.1|FL170987
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: TCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCEST: gi|71444483|gb|DR825533.1|DR825533
genomic: TCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTC-AGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGC
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTEST: gi|211453386|gb|FL460028.1|FL460028
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTEST: gi|211234007|gb|FL171000.1|FL171000
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGNGAGGCACAGACGGAGATACGCGCACTGCGCTEST: gi|211234003|gb|FL170996.1|FL170996
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTEST: gi|149113193|gb|EE295942.2|EE295942
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTEST: gi|211231946|gb|FL170986.1|FL170986
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTEST: gi|211234004|gb|FL170997.1|FL170997
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTEST: gi|211415054|gb|FL462009.1|FL462009
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGK WCAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTEST: gi|211233999|gb|FL170992.1|FL170992
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTEST: gi|211234009|gb|FL171002.1|FL171002
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGN ACAAGGAGAGGGAGCTTGGGGAGGCACEST: gi|211234008|gb|FL171001.1|FL171001
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCAC
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAEST: gi|148943243|gb|EC888304.2|EC888304
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGA
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTEST: gi|148967769|gb|EE019046.2|EE019046
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTEST: gi|211231948|gb|FL170988.1|FL170988
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACEST: gi|76930993|gb|DV172583.1|DV172583
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCAC
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTEST: gi|71444482|gb|DR825532.1|DR825532
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTEST: gi|71439208|gb|DR820258.1|DR820258
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
EST: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
genomic: CTCGGATCCCGTCAGGGTCGAGCTCACCCGCCTGGAGAACGAGCTCAGGGgtcggtttat ... ctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCT
tagtgttttgttttggagcgaggatttatttgtgtgcggtttttgctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAG
tttttgct CT-rich tract
atttatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggtttattgatctgtctgttcatttcgtgctttgattttcttcattgcagtggtatctagtgttttgttttggagcgaggatttatttgtgtgcggtttttgctggtgtcagACAAGGAGAGGGAGCTTGGGGAGGCACAGACGGAGATACGCGCACTGCGCTTGTCGGAGAGGGCGCGGGAGAAAGCCGTCGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG